Detailed information NTG0612438

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LDB25_RS01935
• Genome accession: NZ_CP084695
• Coordinates: 378287..379435 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain DJB5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 373287..384435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDB25_RS01915 (LDB25_01910)	-	373687..374370 (-)	684	WP_014416899.1	ABC transporter ATP-binding protein	-
LDB25_RS01920 (LDB25_01915)	-	374385..375818 (-)	1434	WP_014416900.1	ABC transporter permease	-
LDB25_RS01925 (LDB25_01920)	-	376031..376714 (+)	684	WP_014416901.1	response regulator transcription factor	-
LDB25_RS01930 (LDB25_01925)	-	376701..378128 (+)	1428	WP_088056326.1	sensor histidine kinase	-
LDB25_RS01935 (LDB25_01930)	rapC	378287..379435 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
LDB25_RS01940 (LDB25_01935)	phrC	379419..379538 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
LDB25_RS01945 (LDB25_01940)	-	379689..379799 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
LDB25_RS01950 (LDB25_01945)	-	379879..381243 (-)	1365	WP_014416903.1	aspartate kinase	-
LDB25_RS01955 (LDB25_01950)	ceuB	381657..382610 (+)	954	WP_014416904.1	ABC transporter permease	Machinery gene
LDB25_RS01960 (LDB25_01955)	-	382600..383547 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
LDB25_RS01965 (LDB25_01960)	-	383541..384299 (+)	759	WP_012116804.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=612438 LDB25_RS01935 WP_014304340.1 378287..379435(+) (rapC) [Bacillus velezensis strain DJB5]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=612438 LDB25_RS01935 WP_014304340.1 378287..379435(+) (rapC) [Bacillus velezensis strain DJB5]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATATACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568