Detailed information NTG0612304

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LGL95_RS06790
• Genome accession: NZ_CP084654
• Coordinates: 1515383..1516228 (+)
• Length: 281 a.a.
• NCBI ID: WP_226306258.1
• Uniprot ID: -
• Organism: Pectobacterium versatile strain SR12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1510383..1521228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGL95_RS06760 (LGL95_06760)	gspI	1510794..1511159 (+)	366	WP_044208462.1	type II secretion system minor pseudopilin GspI	-
LGL95_RS06765 (LGL95_06765)	gspJ	1511159..1511809 (+)	651	WP_130634287.1	type II secretion system minor pseudopilin GspJ	-
LGL95_RS06770 (LGL95_06770)	gspK	1511806..1512792 (+)	987	WP_010302966.1	type II secretion system minor pseudopilin GspK	-
LGL95_RS06775 (LGL95_06775)	gspL	1512789..1514066 (+)	1278	WP_211005770.1	type II secretion system protein GspL	-
LGL95_RS06780 (LGL95_06780)	gspM	1514063..1514557 (+)	495	WP_103971574.1	type II secretion system protein GspM	-
LGL95_RS06785 (LGL95_06785)	-	1514547..1515293 (+)	747	WP_130622712.1	type II secretion system protein N	-
LGL95_RS06790 (LGL95_06790)	pilD	1515383..1516228 (+)	846	WP_226306258.1	A24 family peptidase	Machinery gene
LGL95_RS06795 (LGL95_06795)	ypdK	1516374..1516448 (-)	75	WP_099606229.1	membrane protein YpdK	-
LGL95_RS06800 (LGL95_06800)	-	1516805..1517830 (-)	1026	WP_180746253.1	LLM class flavin-dependent oxidoreductase	-
LGL95_RS06805 (LGL95_06805)	-	1518182..1519243 (+)	1062	WP_116586647.1	ABC transporter substrate-binding protein	-
LGL95_RS06810 (LGL95_06810)	-	1519240..1520277 (+)	1038	WP_226306259.1	iron ABC transporter permease	-
LGL95_RS06815 (LGL95_06815)	-	1520279..1521049 (+)	771	WP_226306260.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31394.33 Da
• Isoelectric Point: 7.0813

>NTDB_id=612304 LGL95_RS06790 WP_226306258.1 1515383..1516228(+) (pilD) [Pectobacterium versatile strain SR12]
MDDLREFAQLFPAWWFGSLGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELEMGVADSDRDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGLRKEDTAKPLAFGPWLAMGGVFGVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=612304 LGL95_RS06790 WP_226306258.1 1515383..1516228(+) (pilD) [Pectobacterium versatile strain SR12]
GTGGACGATTTAAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGATCGCTGGGCGTGTTGGGATTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAATGG
GCGTGGCCGATTCCGATCGTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAACAGGCTATT
GCGGTCAAAGATAATATCCCGCTATTCAGCTGGCTGTGGCTGCGAGGCCGCTCCCGCTGCTGTCATCAATCGGTCTCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATCCTGCTGTCTTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGTTGCTGTTTAATCTGTCGGGGACATTTGTTTCATTGAACGATGCCGTAGTCGGCGC
GATGGCGGGTTATTTATCTCTGTGGCTACTTTATTGGGCATTCAAATACGCCACGGGCAAAGAAGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTTTGGTGGCCGCGTTGAGC
GGTCTGGTCGTTACTCTCATCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGTTAGCTTTTGGCCCCTGGCTGGC
AATGGGTGGCGTGTTTGGTGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.554	96.441	0.488
pilD	Vibrio campbellii strain DS40M4	45.556	96.085	0.438
pilD	Neisseria gonorrhoeae MS11	46.36	92.883	0.431
pilD	Acinetobacter baumannii D1279779	42.857	97.153	0.416
pilD	Acinetobacter nosocomialis M2	42.491	97.153	0.413