Detailed information NTG0612054

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LF844_RS10680
• Genome accession: NZ_CP084625
• Coordinates: 2244452..2246677 (+)
• Length: 741 a.a.
• NCBI ID: WP_226284038.1
• Uniprot ID: -
• Organism: Metapseudomonas lalkuanensis strain ACYW.190
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2239452..2251677

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LF844_RS10655 (LF844_10655)	-	2239698..2240282 (-)	585	WP_151133034.1	PilZ domain-containing protein	-
LF844_RS10660 (LF844_10660)	-	2240450..2241700 (+)	1251	WP_151133035.1	lipoprotein-releasing ABC transporter permease subunit	-
LF844_RS10665 (LF844_10665)	lolD	2241693..2242376 (+)	684	WP_151133036.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
LF844_RS10670 (LF844_10670)	-	2242378..2243622 (+)	1245	WP_226284037.1	lipoprotein-releasing ABC transporter permease subunit	-
LF844_RS10675 (LF844_10675)	-	2243751..2244278 (-)	528	WP_151133038.1	DUF2062 domain-containing protein	-
LF844_RS10680 (LF844_10680)	comA	2244452..2246677 (+)	2226	WP_226284038.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LF844_RS10685 (LF844_10685)	-	2246750..2247385 (+)	636	WP_151133039.1	MotA/TolQ/ExbB proton channel family protein	-
LF844_RS10690 (LF844_10690)	-	2247382..2247828 (+)	447	WP_151133040.1	biopolymer transporter ExbD	-
LF844_RS10695 (LF844_10695)	lpxK	2247828..2248832 (+)	1005	WP_151133041.1	tetraacyldisaccharide 4'-kinase	-
LF844_RS10700 (LF844_10700)	-	2248872..2249057 (+)	186	WP_077525327.1	Trm112 family protein	-
LF844_RS10705 (LF844_10705)	kdsB	2249054..2249818 (+)	765	WP_151133042.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LF844_RS10710 (LF844_10710)	-	2249818..2250282 (+)	465	WP_151133043.1	low molecular weight protein-tyrosine-phosphatase	-
LF844_RS10715 (LF844_10715)	murB	2250279..2251298 (+)	1020	WP_226284039.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80475.70 Da
• Isoelectric Point: 10.3304

>NTDB_id=612054 LF844_RS10680 WP_226284038.1 2244452..2246677(+) (comA) [Metapseudomonas lalkuanensis strain ACYW.190]
MVSGLAAFAVGLLLLRWMPILPPVWWLYLQLILGLLLLGSRAWRIGLFLLGIGWACLSAQWALDDRLELRLDGQVRWLEG
RVVGLPSRADGVVRFELEDIHAPRAQLPQRLRLSWHDGPRVLAGERWRLAVRLKRPRGLANPATFDFEAWLLARRIGATG
SVKAGERLSPASGPVAWRDQLRQRLLQVDAWDRAGGLAALVLGDGSGLLDRDWRLLQDTGTTHLMVISGQHITLFAGVLY
GLVAVLARLGLWPRRLPWLPWACAMAFIGGLGYGILAGFDVPVRRACVMLAVVLLWRLRFRHLGFLTPLLAALCVVLVVE
PLVVLQTGFWLSFGAVALLVLAFAGRLGAWRWWMTWWRAQWVMGLGLAPLLLALALPISLSGPVANLVAVPWVSLVVLPL
ALLGAATLGIPWLGEALLWLAGGALELLFQVLAWTSAQLPAWIPVQLPVWAWSLGAMGVLLLIAPAGVPFRALGLALLVP
ALFPPQQRLGPGQAEVRVLDVGQGLSVLVRTREHALLYDAGPRRGDFDIGERVVVPTLRGLGVSRLGLMLISHADSDHAG
GALAVRRGLTVDRVLSGEPERLAPDLEAEPCAAGAAWSWDGVDFLVWQPPPGGDSNDSSCVLAVEAAGERILLSGDLGVR
GEAAWIASGQPLAARWLVAGHHGSRTSSSAAFLRAVKPEKVLISRGHLNAYGHPHPLVASRIRALPAEIHDTAEQGHLLL
RLGAFGEPEVEREKSVFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=612054 LF844_RS10680 WP_226284038.1 2244452..2246677(+) (comA) [Metapseudomonas lalkuanensis strain ACYW.190]
ATGGTCTCGGGCCTGGCCGCCTTTGCTGTCGGCCTTCTTCTTTTGCGCTGGATGCCCATCCTGCCGCCTGTCTGGTGGCT
CTATCTCCAGCTGATTCTCGGCTTGCTGCTGTTGGGCTCGCGGGCCTGGCGAATCGGGCTGTTCCTGCTCGGGATCGGCT
GGGCCTGCCTGAGCGCCCAATGGGCGCTGGATGACCGCCTGGAGCTGCGTCTGGACGGTCAGGTCCGCTGGCTGGAGGGG
AGGGTGGTCGGCTTGCCGAGCAGGGCAGATGGTGTGGTGCGATTCGAGCTGGAGGATATTCATGCACCTCGTGCGCAGTT
GCCCCAGCGCCTGCGGCTGTCCTGGCACGACGGACCGCGGGTACTGGCAGGAGAGCGTTGGCGCCTGGCGGTGCGCCTCA
AGCGGCCGCGCGGTCTCGCGAATCCGGCGACCTTCGATTTCGAAGCCTGGCTGCTGGCAAGGCGCATCGGTGCGACCGGC
TCGGTAAAGGCGGGTGAGCGCCTGTCTCCGGCCAGCGGTCCGGTTGCCTGGCGCGACCAGTTGCGCCAACGCCTGCTCCA
GGTGGACGCATGGGACCGGGCCGGCGGGCTCGCCGCGCTGGTGCTGGGCGATGGCTCCGGCCTGCTGGATCGGGACTGGC
GCCTGCTGCAAGACACCGGTACCACGCACCTGATGGTGATTTCCGGGCAGCACATCACCCTGTTCGCTGGCGTGCTCTAC
GGCCTTGTAGCGGTTCTCGCGCGATTGGGGCTCTGGCCAAGGCGCTTGCCCTGGTTGCCCTGGGCGTGCGCCATGGCCTT
CATTGGTGGGCTCGGTTACGGAATCCTGGCGGGGTTCGACGTACCGGTCAGACGGGCCTGCGTGATGCTGGCGGTGGTCC
TGCTTTGGCGTCTGCGCTTTCGCCACCTGGGGTTCCTCACTCCCTTGCTGGCCGCGCTCTGCGTCGTGCTGGTGGTCGAG
CCCCTGGTGGTCCTGCAGACCGGTTTCTGGTTGTCTTTCGGCGCAGTGGCGTTGCTGGTCCTGGCTTTCGCCGGGCGTCT
GGGTGCCTGGCGCTGGTGGATGACCTGGTGGCGCGCCCAATGGGTGATGGGTCTCGGCCTTGCGCCGCTGCTGCTGGCCC
TGGCGTTGCCCATCAGTCTCAGCGGCCCCGTGGCCAACCTGGTGGCGGTGCCCTGGGTCAGTCTGGTGGTGCTGCCGCTG
GCCCTGTTGGGGGCCGCCACACTGGGCATTCCGTGGTTGGGAGAAGCGTTGCTATGGCTGGCCGGAGGTGCGCTGGAACT
GCTGTTCCAGGTGCTGGCCTGGACGTCTGCGCAGCTGCCTGCGTGGATACCCGTACAGCTCCCGGTGTGGGCCTGGTCGC
TGGGTGCGATGGGTGTCCTTCTGCTGATAGCGCCGGCTGGCGTGCCGTTTCGCGCACTCGGCCTGGCGTTGCTGGTGCCG
GCGCTTTTCCCGCCACAGCAGCGCTTAGGACCCGGTCAGGCCGAGGTGCGGGTGCTGGATGTCGGGCAGGGGCTTTCAGT
GCTGGTGCGTACCCGCGAGCACGCGTTGCTCTATGACGCCGGACCGCGCCGGGGCGACTTCGATATCGGCGAACGGGTGG
TGGTCCCCACCCTGCGAGGCCTTGGCGTATCCCGGCTCGGCCTGATGCTGATCAGCCATGCCGATTCGGACCACGCCGGT
GGGGCTCTGGCGGTTCGACGCGGATTGACCGTGGATCGGGTACTCAGCGGCGAGCCCGAACGCCTTGCGCCAGATCTTGA
AGCAGAGCCCTGCGCGGCGGGCGCGGCCTGGTCCTGGGACGGCGTGGATTTCCTGGTCTGGCAGCCGCCGCCGGGTGGCG
ACAGCAATGACAGCTCCTGCGTGCTGGCCGTCGAAGCCGCCGGCGAGCGCATACTGCTCAGCGGCGATCTGGGCGTTAGA
GGGGAGGCAGCCTGGATCGCCAGCGGCCAGCCGCTCGCGGCGCGCTGGCTGGTGGCCGGGCACCATGGCAGCCGGACTTC
TTCCAGCGCCGCTTTCCTGCGCGCCGTGAAACCGGAGAAGGTGCTGATTTCCCGCGGTCATCTGAATGCCTATGGCCACC
CGCATCCGTTGGTCGCATCGCGAATCCGCGCGCTGCCCGCGGAAATCCACGACACGGCGGAGCAGGGCCACCTGTTGCTG
CGTCTTGGCGCTTTTGGCGAGCCGGAAGTCGAGCGAGAAAAGTCCGTGTTCTGGAGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Competence protein (Competence) (200-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-687)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.361	97.166	0.606
comA	Ralstonia pseudosolanacearum GMI1000	35.901	100	0.39