Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   NOV99_RS02650 Genome accession   NZ_CP101844
Coordinates   528355..529395 (+) Length   346 a.a.
NCBI ID   WP_013730555.1    Uniprot ID   -
Organism   Streptococcus suis strain 2018WUSS151     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 523355..534395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV99_RS02620 (NOV99_02620) tsaE 524585..525025 (+) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NOV99_RS02625 (NOV99_02625) - 525018..525545 (+) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  NOV99_RS02630 (NOV99_02630) - 525542..526735 (+) 1194 WP_002939198.1 LCP family protein -
  NOV99_RS02635 (NOV99_02635) - 526844..527146 (-) 303 WP_002939199.1 hypothetical protein -
  NOV99_RS02640 (NOV99_02640) - 527148..527561 (-) 414 WP_002939203.1 HIT family protein -
  NOV99_RS02645 (NOV99_02645) pptA 527624..528358 (+) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  NOV99_RS02650 (NOV99_02650) pptB 528355..529395 (+) 1041 WP_013730555.1 ABC transporter permease Regulator
  NOV99_RS02655 (NOV99_02655) ccrZ 529445..530239 (+) 795 WP_013730554.1 cell cycle regulator CcrZ -
  NOV99_RS02660 (NOV99_02660) trmB 530236..530874 (+) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NOV99_RS02665 (NOV99_02665) rimP 531132..531602 (+) 471 WP_002942369.1 ribosome maturation factor RimP -
  NOV99_RS02670 (NOV99_02670) nusA 531675..532817 (+) 1143 WP_004194726.1 transcription termination factor NusA -
  NOV99_RS02675 (NOV99_02675) rnpM 532834..533130 (+) 297 WP_002942375.1 RNase P modulator RnpM -
  NOV99_RS02680 (NOV99_02680) - 533087..533425 (+) 339 WP_043028741.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 40172.54 Da        Isoelectric Point: 10.0123

>NTDB_id=611871 NOV99_RS02650 WP_013730555.1 528355..529395(+) (pptB) [Streptococcus suis strain 2018WUSS151]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARCTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENT
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=611871 NOV99_RS02650 WP_013730555.1 528355..529395(+) (pptB) [Streptococcus suis strain 2018WUSS151]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCGTTCCCTGAGAATC
CGTTGCCGATTGTTTTTGTGGTTATTGCAATCAGTCTACTGGTACTAGTGTCCGGAAGAATTGCGACTTATCTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGATGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGAATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTTGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTTCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTACTGGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATACG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

45.739

100

0.465

  pptB Streptococcus thermophilus LMD-9

44.886

100

0.457