Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LDO17_RS03725 Genome accession   NZ_CP084539
Coordinates   794183..794980 (+) Length   265 a.a.
NCBI ID   WP_048685457.1    Uniprot ID   A0AAN2PDY9
Organism   Peribacillus frigoritolerans strain Ant232     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 789183..799980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO17_RS03700 - 789454..790605 (+) 1152 WP_048685462.1 thiolase family protein -
  LDO17_RS03705 - 790737..792317 (+) 1581 WP_048685460.1 fatty acid--CoA ligase -
  LDO17_RS03710 - 792672..792854 (-) 183 WP_034306455.1 YfhD family protein -
  LDO17_RS03715 - 792961..793083 (-) 123 WP_081088510.1 YfhE family protein -
  LDO17_RS03720 - 793136..794056 (-) 921 WP_048685501.1 TIGR01777 family oxidoreductase -
  LDO17_RS03725 recX 794183..794980 (+) 798 WP_048685457.1 recombination regulator RecX Regulator
  LDO17_RS03730 - 795056..795367 (+) 312 WP_034305394.1 YfhH family protein -
  LDO17_RS03735 - 795409..795564 (-) 156 WP_034305387.1 small, acid-soluble spore protein K -
  LDO17_RS03740 - 795678..795944 (+) 267 WP_034305384.1 YfhJ family protein -
  LDO17_RS03745 - 795994..796971 (-) 978 WP_048685454.1 metal-dependent hydrolase -
  LDO17_RS03750 mutY 797180..798298 (+) 1119 WP_048685451.1 A/G-specific adenine glycosylase -
  LDO17_RS03755 - 798487..798711 (-) 225 WP_034305377.1 hypothetical protein -
  LDO17_RS03760 fabL 798778..799527 (+) 750 WP_048685448.1 enoyl-[acyl-carrier-protein] reductase FabL -
  LDO17_RS03765 - 799609..799887 (+) 279 WP_048685445.1 gamma-type small acid-soluble spore protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31464.97 Da        Isoelectric Point: 6.9251

>NTDB_id=611751 LDO17_RS03725 WP_048685457.1 794183..794980(+) (recX) [Peribacillus frigoritolerans strain Ant232]
MPNITKITTQKKRKDRYNIFVDEKYAFSVDEEVLLKFQLKKGMELDDLLLAEIQFHDEIQKAFTDALNYLSYRMRSESEI
RLYLKKKETEEPIIKEAIHKLYSFNYLDDLEFSKAYVRTHVNGGNKGPTTLKLELKEKGVQDKLIVEALKEYPYDIQIEH
ARNLAGKAVKKEKNISERALRLKVEQTLLRKGFPRDVIHEALEDVTVEKDEDEQWDSLCHHAEKMQRRYKNHEGFEYEQK
MKQALYRKGFPIELIERYLSNPDGD

Nucleotide


Download         Length: 798 bp        

>NTDB_id=611751 LDO17_RS03725 WP_048685457.1 794183..794980(+) (recX) [Peribacillus frigoritolerans strain Ant232]
ATGCCAAACATAACAAAAATAACAACCCAAAAGAAACGTAAAGATCGTTATAACATCTTCGTCGACGAAAAATATGCCTT
CAGTGTAGACGAAGAAGTGCTATTGAAATTTCAGTTGAAAAAGGGTATGGAACTTGATGACCTGCTTTTGGCCGAAATAC
AATTCCATGATGAAATCCAAAAAGCATTTACCGATGCACTTAATTATTTATCATACCGGATGCGCTCGGAATCGGAAATT
CGCCTTTATTTAAAAAAGAAGGAAACGGAAGAGCCGATCATTAAGGAAGCGATACATAAACTATACAGTTTTAACTATTT
AGACGACCTTGAATTTTCCAAGGCTTACGTGCGGACCCATGTGAATGGAGGGAATAAAGGGCCCACTACCCTTAAGCTTG
AGCTTAAGGAAAAGGGGGTGCAAGATAAGTTGATTGTCGAGGCATTGAAGGAATACCCTTATGATATTCAAATTGAACAT
GCAAGGAATCTGGCTGGAAAAGCGGTCAAAAAGGAAAAAAACATTTCCGAACGAGCTTTAAGGCTGAAGGTTGAACAAAC
CTTGTTACGGAAAGGTTTCCCAAGAGATGTCATCCATGAAGCACTTGAAGATGTGACGGTTGAAAAGGATGAGGATGAAC
AATGGGATTCCCTTTGCCACCATGCCGAAAAAATGCAACGCCGATATAAAAACCATGAAGGCTTCGAATATGAACAAAAA
ATGAAGCAGGCATTATACCGAAAAGGTTTTCCAATAGAATTGATTGAGCGTTATCTTTCCAATCCTGATGGTGATTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

49.421

97.736

0.483