Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LE197_RS03720 Genome accession   NZ_CP084484
Coordinates   774546..775181 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas sp. PS1(2021)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 769546..780181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LE197_RS03705 (LE197_03705) - 770252..771496 (+) 1245 WP_033975958.1 lipoprotein-releasing ABC transporter permease subunit -
  LE197_RS03710 (LE197_03710) - 771584..772117 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  LE197_RS03715 (LE197_03715) comA 772248..774473 (+) 2226 WP_114232315.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LE197_RS03720 (LE197_03720) exbB 774546..775181 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LE197_RS03725 (LE197_03725) - 775178..775618 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  LE197_RS03730 (LE197_03730) lpxK 775618..776616 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  LE197_RS03735 (LE197_03735) - 776654..776839 (+) 186 WP_003091157.1 Trm112 family protein -
  LE197_RS03740 (LE197_03740) kdsB 776839..777603 (+) 765 WP_033968892.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LE197_RS03745 (LE197_03745) - 777603..778067 (+) 465 WP_033968891.1 low molecular weight protein-tyrosine-phosphatase -
  LE197_RS03750 (LE197_03750) murB 778064..779083 (+) 1020 WP_033968886.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=611431 LE197_RS03720 WP_003091163.1 774546..775181(+) (exbB) [Pseudomonas sp. PS1(2021)]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=611431 LE197_RS03720 WP_003091163.1 774546..775181(+) (exbB) [Pseudomonas sp. PS1(2021)]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81