Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LFR23_RS08610 Genome accession   NZ_CP084480
Coordinates   1815344..1815745 (+) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain RMLUG1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1810344..1820745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFR23_RS08590 (LFR23_08585) - 1810798..1812552 (+) 1755 WP_037540683.1 ABC transporter ATP-binding protein -
  LFR23_RS08595 (LFR23_08590) - 1812536..1814256 (+) 1721 Protein_1683 ABC transporter ATP-binding protein -
  LFR23_RS08600 (LFR23_08595) - 1814255..1814362 (+) 108 Protein_1684 IS200/IS605 family transposase -
  LFR23_RS08605 (LFR23_08600) - 1814702..1815154 (-) 453 WP_002461221.1 YwpF-like family protein -
  LFR23_RS08610 (LFR23_08605) ssb 1815344..1815745 (+) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  LFR23_RS08615 (LFR23_08610) - 1816224..1816931 (+) 708 WP_002492081.1 transglycosylase family protein -
  LFR23_RS08620 (LFR23_08615) tenA 1817344..1818021 (+) 678 WP_002461217.1 thiaminase II -
  LFR23_RS08625 (LFR23_08620) thiD 1818026..1818847 (+) 822 WP_002478968.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LFR23_RS08630 (LFR23_08625) thiM 1818840..1819628 (+) 789 WP_002492088.1 hydroxyethylthiazole kinase -
  LFR23_RS08635 (LFR23_08630) thiE 1819631..1820269 (+) 639 WP_002492090.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=611408 LFR23_RS08610 WP_002461219.1 1815344..1815745(+) (ssb) [Staphylococcus lugdunensis strain RMLUG1]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=611408 LFR23_RS08610 WP_002461219.1 1815344..1815745(+) (ssb) [Staphylococcus lugdunensis strain RMLUG1]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACTAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684