Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LE189_RS10915 | Genome accession | NZ_CP084444 |
| Coordinates | 2254913..2255887 (+) | Length | 324 a.a. |
| NCBI ID | WP_002491905.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain RMLUG6 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2249913..2260887
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LE189_RS10880 (LE189_10870) | rpmG | 2250337..2250486 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| LE189_RS10885 (LE189_10875) | - | 2250736..2251272 (+) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| LE189_RS10890 (LE189_10880) | - | 2251289..2252746 (+) | 1458 | WP_002491909.1 | rhomboid family protein | - |
| LE189_RS10895 (LE189_10885) | - | 2252730..2252933 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| LE189_RS10900 (LE189_10890) | - | 2252930..2253916 (+) | 987 | WP_002491907.1 | ROK family glucokinase | - |
| LE189_RS10905 (LE189_10895) | - | 2253916..2254239 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| LE189_RS10910 (LE189_10900) | - | 2254243..2254866 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| LE189_RS10915 (LE189_10905) | comGA | 2254913..2255887 (+) | 975 | WP_002491905.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LE189_RS10920 (LE189_10910) | comGB | 2255859..2256923 (+) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| LE189_RS10925 (LE189_10915) | comGC | 2256938..2257252 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LE189_RS10930 (LE189_10920) | comGD | 2257185..2257679 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| LE189_RS10935 (LE189_10925) | - | 2257666..2257959 (+) | 294 | WP_002459018.1 | hypothetical protein | - |
| LE189_RS10940 (LE189_10930) | - | 2258021..2258380 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| LE189_RS10945 (LE189_10935) | - | 2258534..2259052 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| LE189_RS10950 (LE189_10940) | gcvT | 2259222..2260313 (+) | 1092 | WP_037540763.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36993.89 Da Isoelectric Point: 8.2830
>NTDB_id=611388 LE189_RS10915 WP_002491905.1 2254913..2255887(+) (comGA) [Staphylococcus lugdunensis strain RMLUG6]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVYYEELNLSIYTKLLTFMKFQAGLDISTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRNASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVYYEELNLSIYTKLLTFMKFQAGLDISTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRNASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=611388 LE189_RS10915 WP_002491905.1 2254913..2255887(+) (comGA) [Staphylococcus lugdunensis strain RMLUG6]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTATATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATATATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAATTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAAATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTATATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATATATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAATTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAAATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |