Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LE167_RS08795 Genome accession   NZ_CP084443
Coordinates   1816182..1816583 (-) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain RMLUG5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1811182..1821583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LE167_RS08770 (LE167_08795) thiE 1811658..1812296 (-) 639 WP_002478970.1 thiamine phosphate synthase -
  LE167_RS08775 (LE167_08800) thiM 1812299..1813087 (-) 789 WP_002478969.1 hydroxyethylthiazole kinase -
  LE167_RS08780 (LE167_08805) thiD 1813080..1813901 (-) 822 WP_002478968.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LE167_RS08785 (LE167_08810) tenA 1813906..1814583 (-) 678 WP_002461217.1 thiaminase II -
  LE167_RS08790 (LE167_08815) - 1814996..1815703 (-) 708 WP_002478967.1 transglycosylase family protein -
  LE167_RS08795 (LE167_08820) ssb 1816182..1816583 (-) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  LE167_RS08800 (LE167_08825) - 1816772..1817224 (+) 453 WP_002478966.1 YwpF-like family protein -
  LE167_RS08805 (LE167_08830) fabZ 1817621..1818061 (-) 441 WP_002461222.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LE167_RS08810 (LE167_08835) murA 1818098..1819363 (-) 1266 WP_002461223.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LE167_RS08815 (LE167_08840) - 1819527..1819760 (-) 234 WP_002478965.1 DUF1146 family protein -
  LE167_RS08820 (LE167_08845) - 1819898..1820299 (-) 402 WP_002461226.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=611357 LE167_RS08795 WP_002461219.1 1816182..1816583(-) (ssb) [Staphylococcus lugdunensis strain RMLUG5]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=611357 LE167_RS08795 WP_002461219.1 1816182..1816583(-) (ssb) [Staphylococcus lugdunensis strain RMLUG5]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACCAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684