Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LE167_RS06590 Genome accession   NZ_CP084443
Coordinates   1390360..1391334 (-) Length   324 a.a.
NCBI ID   WP_002478129.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain RMLUG5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1385360..1396334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LE167_RS06560 (LE167_06585) gcvT 1385934..1387025 (-) 1092 WP_002478133.1 glycine cleavage system aminomethyltransferase GcvT -
  LE167_RS06565 (LE167_06590) - 1387195..1387713 (-) 519 WP_002459021.1 shikimate kinase -
  LE167_RS12545 (LE167_06595) - 1387867..1388325 (-) 459 WP_014533299.1 competence type IV pilus minor pilin ComGF -
  LE167_RS06570 (LE167_06600) - 1388288..1388581 (-) 294 WP_002478131.1 hypothetical protein -
  LE167_RS06575 (LE167_06605) comGD 1388568..1389062 (-) 495 WP_225306455.1 competence type IV pilus minor pilin ComGD -
  LE167_RS06580 (LE167_06610) comGC 1388995..1389309 (-) 315 WP_002459016.1 competence type IV pilus major pilin ComGC Machinery gene
  LE167_RS06585 (LE167_06615) comGB 1389324..1390388 (-) 1065 WP_002478130.1 competence type IV pilus assembly protein ComGB -
  LE167_RS06590 (LE167_06620) comGA 1390360..1391334 (-) 975 WP_002478129.1 competence type IV pilus ATPase ComGA Machinery gene
  LE167_RS06595 (LE167_06625) - 1391381..1392004 (-) 624 WP_002459013.1 MBL fold metallo-hydrolase -
  LE167_RS06600 (LE167_06630) - 1392008..1392331 (-) 324 WP_002459012.1 MTH1187 family thiamine-binding protein -
  LE167_RS06605 (LE167_06635) - 1392331..1393317 (-) 987 WP_002478128.1 ROK family glucokinase -
  LE167_RS06610 (LE167_06640) - 1393314..1393517 (-) 204 WP_002459010.1 YqgQ family protein -
  LE167_RS06615 (LE167_06645) - 1393501..1394958 (-) 1458 WP_002478127.1 rhomboid family protein -
  LE167_RS06620 (LE167_06650) - 1394975..1395511 (-) 537 WP_002459008.1 5-formyltetrahydrofolate cyclo-ligase -
  LE167_RS06625 (LE167_06655) rpmG 1395761..1395910 (-) 150 WP_001830957.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36932.76 Da        Isoelectric Point: 7.8896

>NTDB_id=611345 LE167_RS06590 WP_002478129.1 1390360..1391334(-) (comGA) [Staphylococcus lugdunensis strain RMLUG5]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT

Nucleotide


Download         Length: 975 bp        

>NTDB_id=611345 LE167_RS06590 WP_002478129.1 1390360..1391334(-) (comGA) [Staphylococcus lugdunensis strain RMLUG5]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTTTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

71.207

99.691

0.71
  comGA Staphylococcus aureus N315

71.207

99.691

0.71