Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BASU_RS14620 Genome accession   NC_022081
Coordinates   2987612..2988256 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis UCMB5113     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2982612..2993256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS14585 (BASU_2790) - 2983797..2984228 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  BASU_RS14590 (BASU_2791) - 2984228..2984569 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BASU_RS14595 (BASU_2792) - 2984562..2986043 (+) 1482 WP_041482464.1 Na+/H+ antiporter subunit D -
  BASU_RS14600 (BASU_2793) - 2986049..2986525 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  BASU_RS14605 (BASU_2794) - 2986525..2986809 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BASU_RS14610 (BASU_2795) mnhG 2986793..2987167 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BASU_RS14615 (BASU_2796) - 2987207..2987590 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  BASU_RS14620 (BASU_2797) comA 2987612..2988256 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BASU_RS14625 (BASU_2798) comP 2988337..2990688 (-) 2352 WP_020956269.1 histidine kinase Regulator
  BASU_RS14630 (BASU_2799) comX 2990666..2990836 (-) 171 WP_015418105.1 competence pheromone ComX -
  BASU_RS14635 (BASU_2800) - 2990833..2991762 (-) 930 WP_231945405.1 polyprenyl synthetase family protein -
  BASU_RS14640 (BASU_2801) degQ 2991893..2992033 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BASU_RS14645 (BASU_2802) - 2992498..2992839 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=61134 BASU_RS14620 WP_003152052.1 2987612..2988256(-) (comA) [Bacillus velezensis UCMB5113]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=61134 BASU_RS14620 WP_003152052.1 2987612..2988256(-) (comA) [Bacillus velezensis UCMB5113]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment