Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LE167_RS05235 Genome accession   NZ_CP084443
Coordinates   1095175..1096047 (+) Length   290 a.a.
NCBI ID   WP_012990865.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain RMLUG5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1090175..1101047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LE167_RS05220 (LE167_05230) sucD 1091014..1091922 (+) 909 WP_002478289.1 succinate--CoA ligase subunit alpha -
  LE167_RS05225 (LE167_05235) - 1092119..1093267 (+) 1149 WP_002478288.1 CHAP and LysM peptidoglycan-binding domain-containing protein -
  LE167_RS05230 (LE167_05240) - 1093281..1094516 (+) 1236 WP_002478287.1 aminoacyltransferase -
  LE167_RS05235 (LE167_05245) dprA 1095175..1096047 (+) 873 WP_012990865.1 DNA-processing protein DprA Machinery gene
  LE167_RS05240 (LE167_05250) topA 1096213..1098288 (+) 2076 WP_176746553.1 type I DNA topoisomerase -
  LE167_RS05245 (LE167_05255) trmFO 1098340..1099647 (+) 1308 WP_267257478.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LE167_RS05250 (LE167_05260) xerC 1099779..1100672 (+) 894 WP_002459293.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33042.89 Da        Isoelectric Point: 8.3798

>NTDB_id=611339 LE167_RS05235 WP_012990865.1 1095175..1096047(+) (dprA) [Staphylococcus lugdunensis strain RMLUG5]
MDDIVLLKLRYSGIQAPQFQRLIHAYPNFLSFSEYDLLNLLSKTEIKKWFGDIAAQYKRISEDYILTSLYDASVKFITIN
SQCYSTLLKEIYDFPPILFYRGDISLLNSNTTLAVVGSRKATSYSYKALDFLFSQFNRRFTIVSGLAKGADSMAHELAIQ
HHHATIAVLGFGHLAHYPKETYILRQKIEAHHLSISEYLPFEPVTKYHFPQRNRLISGISKGVLITEAEKRSGSQITIAH
ALDQNRNVYVLPGDLFNPLTQGNLYRAREGACIVTGAEDILMDYDINKVF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=611339 LE167_RS05235 WP_012990865.1 1095175..1096047(+) (dprA) [Staphylococcus lugdunensis strain RMLUG5]
GTGGACGATATTGTTTTATTAAAATTACGTTATAGTGGCATACAAGCGCCTCAATTTCAACGGCTTATACATGCGTACCC
TAACTTTTTATCATTTTCAGAGTATGATTTACTTAATTTATTATCGAAGACAGAAATTAAAAAATGGTTCGGAGACATAG
CTGCACAATACAAACGGATTTCTGAAGATTATATTTTAACATCATTATACGATGCCTCTGTCAAATTTATCACTATCAAT
AGCCAATGTTATTCTACCTTATTAAAAGAAATTTATGATTTTCCACCAATCCTATTTTATCGTGGTGATATTTCACTCCT
TAATTCAAACACTACATTAGCCGTTGTCGGTTCTCGTAAAGCCACAAGTTATTCCTACAAAGCTTTAGACTTTTTATTTA
GCCAATTTAATCGTCGCTTCACGATTGTTTCAGGTTTAGCTAAAGGAGCCGATAGCATGGCACACGAATTAGCTATACAA
CACCATCATGCGACAATTGCAGTACTTGGATTTGGACATCTCGCACATTATCCTAAAGAAACATATATTTTACGTCAAAA
AATTGAAGCACATCACTTATCAATCAGTGAATATTTACCTTTCGAACCAGTAACGAAATATCATTTTCCACAACGAAATC
GCTTAATAAGCGGTATTTCTAAAGGTGTACTGATTACCGAAGCTGAAAAACGTAGTGGTAGTCAGATTACAATCGCACAT
GCACTTGACCAAAATAGAAATGTTTATGTTCTTCCAGGAGATCTATTTAATCCACTTACACAAGGTAATTTATATCGTGC
ACGAGAAGGAGCGTGTATTGTTACAGGAGCTGAAGATATTTTAATGGATTATGATATTAATAAAGTTTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48.136

100

0.49
  dprA Staphylococcus aureus MW2

48.136

100

0.49