Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LE164_RS09650 | Genome accession | NZ_CP084440 |
| Coordinates | 2079946..2080920 (-) | Length | 324 a.a. |
| NCBI ID | WP_002478129.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain RMLUG4 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2074946..2085920
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LE164_RS09620 (LE164_09635) | gcvT | 2075520..2076611 (-) | 1092 | WP_267262595.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| LE164_RS09625 (LE164_09640) | - | 2076781..2077299 (-) | 519 | WP_002459021.1 | shikimate kinase | - |
| LE164_RS09630 (LE164_09650) | - | 2077874..2078167 (-) | 294 | WP_002478131.1 | hypothetical protein | - |
| LE164_RS09635 (LE164_09655) | comGD | 2078154..2078648 (-) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| LE164_RS09640 (LE164_09660) | comGC | 2078581..2078895 (-) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LE164_RS09645 (LE164_09665) | comGB | 2078910..2079974 (-) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| LE164_RS09650 (LE164_09670) | comGA | 2079946..2080920 (-) | 975 | WP_002478129.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LE164_RS09655 (LE164_09675) | - | 2080967..2081590 (-) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| LE164_RS09660 (LE164_09680) | - | 2081594..2081917 (-) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| LE164_RS09665 (LE164_09685) | - | 2081917..2082903 (-) | 987 | WP_002478128.1 | ROK family glucokinase | - |
| LE164_RS09670 (LE164_09690) | - | 2082900..2083103 (-) | 204 | WP_002459010.1 | YqgQ family protein | - |
| LE164_RS09675 (LE164_09695) | - | 2083087..2084544 (-) | 1458 | WP_002478127.1 | rhomboid family intramembrane serine protease | - |
| LE164_RS09680 (LE164_09700) | - | 2084561..2085097 (-) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| LE164_RS09685 (LE164_09705) | rpmG | 2085347..2085496 (-) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36932.76 Da Isoelectric Point: 7.8896
>NTDB_id=611312 LE164_RS09650 WP_002478129.1 2079946..2080920(-) (comGA) [Staphylococcus lugdunensis strain RMLUG4]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=611312 LE164_RS09650 WP_002478129.1 2079946..2080920(-) (comGA) [Staphylococcus lugdunensis strain RMLUG4]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
71.207 |
99.691 |
0.71 |
| comGA | Staphylococcus aureus N315 |
71.207 |
99.691 |
0.71 |