Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LE165_RS03620 Genome accession   NZ_CP084434
Coordinates   733029..733430 (-) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain RMLUG2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 728029..738430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LE165_RS03595 (LE165_03605) thiE 728505..729143 (-) 639 WP_002461213.1 thiamine phosphate synthase -
  LE165_RS03600 (LE165_03610) thiM 729146..729934 (-) 789 WP_037544998.1 hydroxyethylthiazole kinase -
  LE165_RS03605 (LE165_03615) thiD 729927..730748 (-) 822 WP_084951664.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LE165_RS03610 (LE165_03620) tenA 730753..731430 (-) 678 WP_084951662.1 thiaminase II -
  LE165_RS03615 (LE165_03625) - 731843..732550 (-) 708 WP_062077890.1 transglycosylase family protein -
  LE165_RS03620 (LE165_03630) ssb 733029..733430 (-) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  LE165_RS03625 (LE165_03635) - 733619..734071 (+) 453 WP_002478966.1 YwpF-like family protein -
  LE165_RS03630 (LE165_03640) fabZ 734468..734908 (-) 441 WP_002461222.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LE165_RS03635 (LE165_03645) murA 734945..736210 (-) 1266 WP_002461223.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LE165_RS03640 (LE165_03650) - 736374..736607 (-) 234 WP_002478965.1 DUF1146 family protein -
  LE165_RS03645 (LE165_03655) - 736745..737146 (-) 402 WP_002461226.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=611243 LE165_RS03620 WP_002461219.1 733029..733430(-) (ssb) [Staphylococcus lugdunensis strain RMLUG2]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=611243 LE165_RS03620 WP_002461219.1 733029..733430(-) (ssb) [Staphylococcus lugdunensis strain RMLUG2]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACCAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684