Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NNW99_RS16825 Genome accession   NZ_CP101651
Coordinates   3765341..3765940 (-) Length   199 a.a.
NCBI ID   WP_003991835.1    Uniprot ID   A0A2N9BA40
Organism   Streptomyces sp. CRCS-T-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3760341..3770940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNW99_RS16800 (NNW99_16805) - 3761094..3761789 (+) 696 WP_215119959.1 response regulator transcription factor -
  NNW99_RS16805 (NNW99_16810) - 3761786..3763126 (+) 1341 WP_215119960.1 HAMP domain-containing sensor histidine kinase -
  NNW99_RS16810 (NNW99_16815) - 3763151..3763690 (-) 540 WP_215119961.1 SgcJ/EcaC family oxidoreductase -
  NNW99_RS16815 (NNW99_16820) - 3763843..3764679 (+) 837 WP_215119962.1 PhzF family phenazine biosynthesis protein -
  NNW99_RS16820 (NNW99_16825) - 3764689..3765348 (-) 660 WP_215119963.1 DUF5063 domain-containing protein -
  NNW99_RS16825 (NNW99_16830) recR 3765341..3765940 (-) 600 WP_003991835.1 recombination mediator RecR Machinery gene
  NNW99_RS16830 (NNW99_16835) - 3766068..3766409 (-) 342 WP_215119964.1 YbaB/EbfC family nucleoid-associated protein -
  NNW99_RS16835 (NNW99_16840) - 3766678..3767436 (+) 759 WP_215119965.1 SLATT domain-containing protein -
  NNW99_RS16840 (NNW99_16845) - 3767604..3769151 (-) 1548 WP_215119966.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21780.14 Da        Isoelectric Point: 4.9848

>NTDB_id=611152 NNW99_RS16825 WP_003991835.1 3765341..3765940(-) (recR) [Streptomyces sp. CRCS-T-1]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDTRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=611152 NNW99_RS16825 WP_003991835.1 3765341..3765940(-) (recR) [Streptomyces sp. CRCS-T-1]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCGAAGAGCGCCCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAACCGACGGACGTACGGCGCCTCGCCCAGGCCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACACCCGGCGCGACCCCGCCGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGGACGCGTGAGTTCCGGGGCCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGACGGGGTGGGGCCCGACGACCTGCGCATCAGGGAGCTGCTCGCCCGGCTCGCCGACGGCA
CGGTCACCGAGCTGATCCTCGCCACGGATCCGAATCTCGAAGGCGAGGCGACCGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N9BA40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452