Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NON14_RS09935 Genome accession   NZ_CP101642
Coordinates   1940079..1940675 (-) Length   198 a.a.
NCBI ID   WP_409043465.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HRB10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935079..1945675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS09900 (NON14_09870) - 1935541..1936287 (-) 747 WP_016264623.1 acyl-[acyl-carrier-protein] thioesterase -
  NON14_RS09905 (NON14_09875) rsmI 1936298..1937176 (-) 879 WP_099947246.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NON14_RS09910 (NON14_09880) - 1937275..1937628 (-) 354 WP_011374052.1 DNA replication initiation control protein YabA -
  NON14_RS09915 (NON14_09885) holB 1937680..1938672 (-) 993 WP_025016439.1 DNA polymerase III subunit delta' -
  NON14_RS09920 (NON14_09890) - 1938676..1939005 (-) 330 WP_011374050.1 cyclic-di-AMP receptor -
  NON14_RS09925 (NON14_09895) tmk 1939020..1939664 (-) 645 WP_099947245.1 dTMP kinase -
  NON14_RS09930 (NON14_09900) - 1939808..1940062 (-) 255 WP_011374048.1 YaaL family protein -
  NON14_RS09935 (NON14_09905) recR 1940079..1940675 (-) 597 WP_409043465.1 recombination mediator RecR Machinery gene
  NON14_RS09940 (NON14_09910) - 1940701..1941009 (-) 309 WP_056947773.1 YbaB/EbfC family nucleoid-associated protein -
  NON14_RS09945 (NON14_09915) dnaX 1941036..1942754 (-) 1719 WP_099947244.1 DNA polymerase III subunit gamma/tau -
  NON14_RS09955 (NON14_09925) tadA 1943179..1943697 (-) 519 WP_147000237.1 tRNA adenosine(34) deaminase TadA -
  NON14_RS09960 (NON14_09930) - 1943778..1944122 (-) 345 WP_056947769.1 hypothetical protein -
  NON14_RS09965 (NON14_09935) - 1944195..1944800 (-) 606 WP_011374042.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22079.43 Da        Isoelectric Point: 5.1115

>NTDB_id=611010 NON14_RS09935 WP_409043465.1 1940079..1940675(-) (recR) [Latilactobacillus sakei strain HRB10]
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISARRDLHYCSVCGNITDEDPCEICRDTVRSQE
MILVVEQPKDVMSMERMNDYHGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGEATAMYISRLI
KPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=611010 NON14_RS09935 WP_409043465.1 1940079..1940675(-) (recR) [Latilactobacillus sakei strain HRB10]
ATGCAATATCCAGAACCAATTGCGAAGTTGATCGAAAGTTATATGAAGTTACCAGGCATTGGTAACAAAACAGCAACGCG
ATTAGCTTTTTATACGATTGATATGAATGAAGATGACGTGACTAACTTTGCCAAGAATCTGATTTCAGCACGCCGAGACC
TCCATTATTGTAGTGTCTGTGGCAATATCACTGATGAAGATCCTTGTGAGATTTGTCGGGATACCGTGCGTAGTCAGGAA
ATGATTTTGGTGGTCGAACAACCTAAAGATGTGATGTCGATGGAACGGATGAACGATTATCACGGTCTCTATCACGTCTT
GCACGGGGTGTTGTCACCAATTGAAGGTAAAGGGCCAGACGATATTAATATTGCTAATTTAATTAAACGACTCCAAAAAA
CACCAGCTAAAGAAGTCATCATCGCCACCAATGCAACGCCAGAAGGGGAAGCAACGGCGATGTATATTTCACGGCTAATT
AAGCCGGCCGGGATTAAAGTCACTCGCTTAGCCCATGGTTTAGCGGTCGGGAGCGATATTGAATATGCGGATGAGATGAC
TTTATTAAAAGCTGTCGAGGGTCGTCAAGAAATCTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-77)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

66.667

100

0.667
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

100

0.48