Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M493_RS11485 Genome accession   NC_022080
Coordinates   2314440..2316161 (-) Length   573 a.a.
NCBI ID   WP_020960520.1    Uniprot ID   S6A312
Organism   Geobacillus genomosp. 3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2309440..2321161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M493_RS11460 (M493_12360) - 2310044..2310292 (+) 249 WP_041267779.1 DUF2627 domain-containing protein -
  M493_RS11465 (M493_12365) - 2310367..2311095 (-) 729 WP_020960514.1 glycerophosphodiester phosphodiesterase -
  M493_RS17755 (M493_12370) - 2311205..2311357 (+) 153 WP_020960515.1 YycC family protein -
  M493_RS11470 (M493_12375) spo0A 2311489..2312268 (-) 780 WP_020960516.1 sporulation transcription factor Spo0A -
  M493_RS18315 - 2312526..2312630 (-) 105 Protein_2254 sporulation transcription factor Spo0A -
  M493_RS11480 (M493_12390) spoIVB 2312922..2314217 (-) 1296 WP_020960519.1 SpoIVB peptidase -
  M493_RS11485 (M493_12395) recN 2314440..2316161 (-) 1722 WP_020960520.1 DNA repair protein RecN Machinery gene
  M493_RS11490 (M493_12400) ahrC 2316305..2316754 (-) 450 WP_020960521.1 transcriptional regulator AhrC/ArgR -
  M493_RS11495 (M493_12405) - 2316836..2317684 (-) 849 WP_041267962.1 TlyA family RNA methyltransferase -
  M493_RS11500 (M493_12410) dxs 2317691..2319583 (-) 1893 WP_020960523.1 1-deoxy-D-xylulose-5-phosphate synthase -
  M493_RS11505 (M493_12420) - 2319863..2320756 (-) 894 WP_020960525.1 polyprenyl synthetase family protein -
  M493_RS11510 (M493_12425) - 2320760..2320990 (-) 231 WP_020960526.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 63649.06 Da        Isoelectric Point: 5.0403

>NTDB_id=61053 M493_RS11485 WP_020960520.1 2314440..2316161(-) (recN) [Geobacillus genomosp. 3]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDNRHPCCQK
CAEVGIDVNEGMVVLRRDILANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEVAEAL
ARYRAVYKQHEALVKKLKKLSENEQQMAHRLDLLTFQLREIEQATLEPGEDERLMEEKVRIVNFQKIYGAIQKSYEALAG
EGRGLDSIGEAMIQLDDVAAMDASLKEAHETVANSYYLLEDVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGAT
IADILQYAGAIAEEIETIENRETHVHELERQLAAVTGDLLVEAKHVTNVRQAYARDLIGRIHQELKDLYMEKTQFDILFA
KREGPLDAPLVDGVPVKFHEDGIDAVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLLIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQH
AKELLELAAKMKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=61053 M493_RS11485 WP_020960520.1 2314440..2316161(-) (recN) [Geobacillus genomosp. 3]
ATGCTCGCCGAGCTGTCGATTAAAAATTTTGCCATTATTGAATCGCTCTCGTTGTCGTTTGATAAAGGGCTGACAGTGTT
AACCGGCGAAACAGGGGCTGGTAAATCGATCATCATCGATGCGATTCATTTATTGATCGGCGGGCGCGGTTCCGCCGAGT
TTGTTCGTTTCGGCGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGACGATAACCGCCATCCGTGCTGCCAAAAA
TGCGCCGAGGTCGGCATCGATGTGAACGAAGGGATGGTCGTTTTGCGCCGTGACATTTTAGCCAATGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTGGTGACGACAGCCGTATTGCGCGACATCGGGGCGACGCTTGTCGACATTCACGGCCAGCATG
AACACCAAGAGTTGATGGATCCGTCCCGCCACTTACCGCTTCTTGACGAATTCGGCGGCGCGGAGGTGGCGGAGGCGCTC
GCCCGCTATCGCGCCGTGTATAAGCAGCATGAGGCGTTGGTGAAAAAGTTAAAAAAGCTAAGTGAAAATGAGCAACAAAT
GGCGCATCGGCTCGATTTATTGACATTCCAGCTGCGGGAAATCGAGCAGGCAACGCTCGAGCCGGGGGAAGACGAACGGC
TGATGGAAGAAAAAGTGCGCATCGTCAACTTTCAAAAGATATACGGGGCCATCCAGAAGAGCTATGAAGCGCTCGCCGGT
GAAGGGCGCGGCCTTGACTCAATCGGGGAGGCGATGATCCAGCTCGATGACGTCGCCGCGATGGACGCATCGCTCAAAGA
GGCGCATGAAACGGTGGCCAACAGCTACTATTTGCTCGAGGACGTCATGTACAAGCTGCGCGATCAGCTTGAGGAGCTCG
AATACGACCCGGCGCGGCTTGACGCCATTGAAAGCCGCCTCGCCGAAATCCAGCAGTTAAAGCGGAAATACGGCGCCACG
ATCGCCGACATTTTGCAATACGCTGGGGCGATTGCGGAGGAAATCGAGACAATTGAAAACCGCGAGACGCATGTGCACGA
GCTTGAACGGCAGCTCGCGGCAGTGACGGGTGATTTGCTTGTTGAGGCGAAACATGTGACCAACGTCCGCCAGGCGTACG
CCCGGGATTTGATTGGGCGCATTCACCAAGAGTTGAAAGATTTGTACATGGAGAAGACACAGTTTGACATTCTCTTTGCG
AAGCGTGAAGGACCGCTTGATGCTCCGTTAGTCGATGGCGTGCCGGTGAAGTTTCATGAAGATGGCATCGACGCCGTTGA
GTTTTACATCTCAACGAACGTCGGCGAGCCGTTGAAACCGCTCGTTAAAGTTGCTTCAGGCGGGGAGCTGTCACGTATTA
TGTTGGCGTTGAAAACGATCTTTTCCAAACATCAAGGGGTGACCTCGATTATTTTCGACGAGGTGGACACGGGCGTCAGC
GGCCGCGTCGCCCAGGCGATCGCCGAAAAAATTTACCGCATCGCCAGCGGTTCACAAGTGCTATGTATTTCTCACCTGCC
GCAAGTGGCCGCCATGGCGGATACGCATTTATTGATCGCCAAAGAAACGGACGGAACGCGGACGAAAACAGTGGTGAAAA
AGTTGGATGAGGAGGAGAAGGTAAAAGAAATCGGGCGGATGATTTCCGGCGTCGAAATGACAGAATTGACGAAACAACAC
GCCAAGGAGCTATTGGAGCTGGCGGCTAAAATGAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6A312

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.718

100

0.628

Multiple sequence alignment