Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LDO52_RS05780 Genome accession   NZ_CP084300
Coordinates   1184238..1184684 (+) Length   148 a.a.
NCBI ID   WP_074383542.1    Uniprot ID   A0A2H9UII5
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1179238..1189684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS05750 (LDO52_05750) kdsB 1180041..1180802 (+) 762 WP_225554043.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LDO52_RS05755 (LDO52_05755) - 1180817..1181797 (+) 981 WP_180076190.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  LDO52_RS05760 (LDO52_05760) - 1181813..1182154 (+) 342 WP_005170399.1 PilZ domain-containing protein -
  LDO52_RS05765 (LDO52_05765) - 1182182..1182955 (+) 774 WP_225554045.1 TatD family hydrolase -
  LDO52_RS05770 (LDO52_05770) - 1182996..1183610 (+) 615 WP_004645466.1 TetR/AcrR family transcriptional regulator -
  LDO52_RS05775 (LDO52_05775) - 1183625..1184176 (+) 552 WP_074383251.1 type II secretion system protein -
  LDO52_RS05780 (LDO52_05780) xcpV 1184238..1184684 (+) 447 WP_074383542.1 type II secretion system minor pseudopilin GspI Machinery gene
  LDO52_RS05785 (LDO52_05785) xcpW 1184681..1185316 (+) 636 WP_005170411.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LDO52_RS05790 (LDO52_05790) gspK 1185329..1186297 (+) 969 WP_081273088.1 type II secretion system minor pseudopilin GspK -
  LDO52_RS05795 (LDO52_05795) - 1186451..1187047 (+) 597 WP_005097321.1 6-pyruvoyl trahydropterin synthase family protein -
  LDO52_RS05800 (LDO52_05800) ung 1187094..1187807 (+) 714 WP_074383250.1 uracil-DNA glycosylase -
  LDO52_RS05805 (LDO52_05805) - 1187804..1188925 (+) 1122 WP_074383249.1 enoyl-CoA hydratase/isomerase family protein -
  LDO52_RS05810 (LDO52_05810) tadA 1188933..1189448 (+) 516 WP_180040959.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16537.79 Da        Isoelectric Point: 7.3853

>NTDB_id=610515 LDO52_RS05780 WP_074383542.1 1184238..1184684(+) (xcpV) [Acinetobacter pseudolwoffii strain XMC5X702]
MHCGHFEQSSWSCAAVKQHFTHRSSGFTLLEVMVALAIFATAAMTLTKVAMQYTQSTSNAILRTKAQFVALNEVAQMEIN
QQWMDGTASKQLTQQGETWQIDKRSEPTISPNVQRIELQVSLVNQETGQVASGISSLMFFNHRMNNTP

Nucleotide


Download         Length: 447 bp        

>NTDB_id=610515 LDO52_RS05780 WP_074383542.1 1184238..1184684(+) (xcpV) [Acinetobacter pseudolwoffii strain XMC5X702]
TTGCATTGTGGGCACTTCGAGCAGAGCTCTTGGTCTTGCGCAGCGGTGAAACAGCATTTCACTCATCGCAGCTCAGGCTT
TACCTTGCTGGAAGTTATGGTTGCACTGGCAATTTTCGCCACCGCAGCCATGACGCTGACCAAAGTCGCGATGCAATATA
CCCAGTCAACCTCGAATGCCATTCTGCGCACCAAAGCACAGTTTGTTGCCCTGAACGAAGTGGCTCAAATGGAAATCAAT
CAGCAATGGATGGATGGTACGGCCTCCAAACAGCTGACCCAGCAAGGCGAAACCTGGCAAATTGACAAGCGCAGTGAACC
GACGATCAGTCCCAATGTGCAGCGTATTGAACTACAGGTCAGTCTGGTCAATCAGGAGACTGGTCAAGTTGCATCCGGGA
TCAGCAGCTTGATGTTCTTTAATCATCGCATGAACAATACGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(22-46)

Type II secretion system (T2SS), protein I (T2SSI)

(63-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H9UII5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.333

81.081

0.595