Detailed information NTG0610516

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: LDO52_RS05785
• Genome accession: NZ_CP084300
• Coordinates: 1184681..1185316 (+)
• Length: 211 a.a.
• NCBI ID: WP_005170411.1
• Uniprot ID: -
• Organism: Acinetobacter pseudolwoffii strain XMC5X702
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1179681..1190316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO52_RS05750 (LDO52_05750)	kdsB	1180041..1180802 (+)	762	WP_225554043.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LDO52_RS05755 (LDO52_05755)	-	1180817..1181797 (+)	981	WP_180076190.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
LDO52_RS05760 (LDO52_05760)	-	1181813..1182154 (+)	342	WP_005170399.1	PilZ domain-containing protein	-
LDO52_RS05765 (LDO52_05765)	-	1182182..1182955 (+)	774	WP_225554045.1	TatD family hydrolase	-
LDO52_RS05770 (LDO52_05770)	-	1182996..1183610 (+)	615	WP_004645466.1	TetR/AcrR family transcriptional regulator	-
LDO52_RS05775 (LDO52_05775)	-	1183625..1184176 (+)	552	WP_074383251.1	type II secretion system protein	-
LDO52_RS05780 (LDO52_05780)	xcpV	1184238..1184684 (+)	447	WP_074383542.1	type II secretion system minor pseudopilin GspI	Machinery gene
LDO52_RS05785 (LDO52_05785)	xcpW	1184681..1185316 (+)	636	WP_005170411.1	type II secretion system minor pseudopilin GspJ	Machinery gene
LDO52_RS05790 (LDO52_05790)	gspK	1185329..1186297 (+)	969	WP_081273088.1	type II secretion system minor pseudopilin GspK	-
LDO52_RS05795 (LDO52_05795)	-	1186451..1187047 (+)	597	WP_005097321.1	6-pyruvoyl trahydropterin synthase family protein	-
LDO52_RS05800 (LDO52_05800)	ung	1187094..1187807 (+)	714	WP_074383250.1	uracil-DNA glycosylase	-
LDO52_RS05805 (LDO52_05805)	-	1187804..1188925 (+)	1122	WP_074383249.1	enoyl-CoA hydratase/isomerase family protein	-
LDO52_RS05810 (LDO52_05810)	tadA	1188933..1189448 (+)	516	WP_180040959.1	tRNA adenosine(34) deaminase TadA	-
LDO52_RS05815 (LDO52_05815)	-	1189504..1189935 (+)	432	WP_225554049.1	SRPBCC family protein	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 24097.29 Da
• Isoelectric Point: 4.6378

>NTDB_id=610516 LDO52_RS05785 WP_005170411.1 1184681..1185316(+) (xcpW) [Acinetobacter pseudolwoffii strain XMC5X702]
MKPKGFTLVELLVAIAIFAVLSALGWKVFDYIVKTKDQNAVHEQRLGQLQETYQQILRDTVQAVPLTANINSDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERIEYQYRADEQKLYRLKYRNLNQTGRDQPESSILLSDVEQFQVVVLNPNELTQWPD
SSMDLNQLEQKQRLPKGIKINLTVNGVSYEWLFSLLNTDFLLDNQNTGQPG

Nucleotide

• Length: 636 bp

>NTDB_id=610516 LDO52_RS05785 WP_005170411.1 1184681..1185316(+) (xcpW) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGAAGCCTAAAGGATTTACCCTGGTCGAATTATTGGTTGCCATTGCAATCTTTGCGGTACTGTCTGCTTTGGGCTGGAA
AGTTTTTGATTATATTGTCAAAACCAAAGATCAAAATGCAGTACATGAACAGCGTCTAGGTCAGCTACAGGAAACCTATC
AGCAAATTTTACGGGATACGGTACAGGCAGTCCCTTTAACGGCCAATATCAATAGTGATATTCAACCGGCTCTGGTTTTG
CAAAATGGCCGTTTTAATTTTAGTAAAACTGGCGTGACTGATCCTCTGGAGGAGGGTATTTCGCCAGATGAACGCATTGA
ATATCAGTATCGGGCCGATGAACAAAAACTGTATCGACTGAAATATCGCAACCTGAATCAGACCGGTCGTGATCAACCTG
AATCCAGTATTTTATTATCGGACGTTGAGCAATTTCAGGTTGTGGTGCTGAATCCAAATGAACTCACACAGTGGCCTGAT
TCTTCTATGGATTTAAATCAGCTAGAGCAGAAACAGCGCTTGCCCAAAGGCATTAAAATCAATTTAACCGTGAATGGCGT
CAGCTATGAGTGGCTGTTTAGTTTATTAAATACGGACTTTTTGCTTGATAATCAGAATACAGGTCAACCCGGCTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (4-24)

• Type II secretion system (T2SS), protein J (T2SSJ) (58-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	58.333	96.682	0.564