Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   LDO52_RS03390 Genome accession   NZ_CP084300
Coordinates   693394..697839 (+) Length   1481 a.a.
NCBI ID   WP_225553765.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 688394..702839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS03365 (LDO52_03365) - 688853..689500 (-) 648 WP_225553761.1 hypothetical protein -
  LDO52_RS03370 (LDO52_03370) pilG 689788..690171 (+) 384 WP_005097851.1 twitching motility response regulator PilG Regulator
  LDO52_RS03375 (LDO52_03375) - 690196..690564 (+) 369 WP_225553764.1 response regulator -
  LDO52_RS03380 (LDO52_03380) - 690570..691106 (+) 537 WP_005097846.1 chemotaxis protein CheW -
  LDO52_RS03385 (LDO52_03385) - 691153..693225 (+) 2073 WP_005097845.1 methyl-accepting chemotaxis protein -
  LDO52_RS03390 (LDO52_03390) chpA 693394..697839 (+) 4446 WP_225553765.1 Hpt domain-containing protein Regulator
  LDO52_RS03395 (LDO52_03395) - 697843..698301 (+) 459 WP_005169706.1 hypothetical protein -
  LDO52_RS03400 (LDO52_03400) dapE 698367..699503 (-) 1137 WP_159138274.1 succinyl-diaminopimelate desuccinylase -
  LDO52_RS03405 (LDO52_03405) - 699625..699777 (-) 153 WP_004280704.1 entericidin A/B family lipoprotein -
  LDO52_RS03410 (LDO52_03410) - 699890..700765 (-) 876 WP_074383435.1 DUF1853 family protein -
  LDO52_RS03415 (LDO52_03415) - 700853..701311 (+) 459 WP_225553767.1 YbaN family protein -
  LDO52_RS03420 (LDO52_03420) elsL 701308..701841 (+) 534 WP_005097834.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1481 a.a.        Molecular weight: 165553.67 Da        Isoelectric Point: 4.3367

>NTDB_id=610512 LDO52_RS03390 WP_225553765.1 693394..697839(+) (chpA) [Acinetobacter pseudolwoffii strain XMC5X702]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLVNPDHQENLKTIRRHFHTLKGSGRMVGAKSA
GEMAWAVEDTLNRVLSGSIQLTATVQKFAQAVLNVYQYALYPKFKHVQELDLDLRPMLLLGQQLQQNLSPEPALEELLAL
ADHLTAEGQTTGLEIADHDLSESAAIIETAPVEVAVRTDIEETVAIFIEEAEEHLETIATFLRTEDEKSQDYNALIRAIH
TLRGSSSMAQIEQIFEASSKVEQLFKTLLQDEIVSTSKETALLIQYAEFISDYVHLLGQGNTEKLDAVYATFEAVWSDYG
FAVTETDAVQTQGLVSKLVELDIDLLLDAEFEFDKRAQVDYPEYIQALSQQAAELLAHTDSRAAKGIHEFTADLKSAYDA
LLKKPVLLNSNYAYELFAQAHQEFIHLFDTLAAGQRVILNDDIQKTLSELSAFVQQDLEIFAEDTETSGLEPTTDILPTA
DTLSTGSVDFAALSQRIAADRQQRESAETNRDFDEELLGIFLEEADELLAGIDEDLNTWSKKQDDTTSLNNLMRHLHTLK
GGANMIAASHIGLIAHELESIYERVIRQQIAVTPALIQIVRLVQDNVSDRIQSIRDDGIDYPATEAVAILQNIQALLSGQ
MLAAVESTTTEFNVTALEMLSTPEVPFEESVATEQPATDLAETEKLVEIPGFTENQVERSEEDELKSIVEETFLEESEEI
LANAEKLLNQWFDQRSDRSLLLQLQRAAHSIKGGARMIETEEVASIAYELETTFEQFAVYQFNSNAYDGLLQKTLAWLKQ
AIFQRDYSGFEQLQSSLKKIAYVDVTAQLPERLAKTEHLVVSTDFGFVEGDGTEPPQMMGEWANTGSSDSNNEMIRISAD
LVEKMIDLSGENSINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADFDPLEMDQYSSL
NQLSKSLAESASDLVDFKSTLADKIRETEGLLLQQSRIQAEIQESLMRTRLVPFDRMLPRLQRIVRQTSTTLNRPAELIV
QNTEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRLALNKPEVGSIVLNISRQGTDVIVSFSDDGKGIDAEKIREKAL
SLDLIKADQPIDQDEILQYIFHPGFTTAKAVTQISGRGVGLDVVQSEIKLLGGHVSVSSELGKGTVFTIRVPTTVAVSDA
LMVKAGDQQYAISLAQIDRIVRIAPTTLETYFNSKDDYFKIDGENYKLRYLSEFVGTQPIPRLNNVGHSLPVLLIKGNSG
QTIALLVDQLVGSRAQIVVKPIGQQFANIGVVAGATILGDGQVCLILDGQNIARQIQATQRVKQMHDQRDGSRHSNARRL
VMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDGFEVTNLVRHHDIHRDLPIIMITS
RTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQG

Nucleotide


Download         Length: 4446 bp        

>NTDB_id=610512 LDO52_RS03390 WP_225553765.1 693394..697839(+) (chpA) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGATAGTTATCTTGATCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAGGAAATCGAAGAAATCTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGCTGGTCAATCCAGATC
ATCAGGAAAATCTGAAGACCATTCGCCGCCATTTTCATACCCTGAAAGGTTCAGGTCGTATGGTGGGGGCAAAATCGGCA
GGGGAAATGGCCTGGGCAGTTGAAGATACCCTGAACCGGGTCTTGTCCGGTTCAATTCAGCTGACAGCGACGGTGCAAAA
ATTTGCCCAAGCGGTACTGAATGTCTATCAATATGCTTTATATCCAAAATTCAAACATGTACAGGAATTGGATCTCGACC
TGCGTCCAATGCTGCTGTTGGGACAACAATTACAACAAAACCTTTCACCTGAACCTGCGTTAGAAGAATTATTAGCATTG
GCCGATCATTTGACTGCCGAAGGTCAGACCACAGGGCTGGAAATTGCAGATCATGACCTAAGTGAATCTGCTGCTATTAT
CGAAACAGCGCCGGTAGAAGTAGCGGTTCGCACTGATATTGAAGAAACCGTGGCCATCTTCATTGAAGAAGCCGAAGAGC
ATCTGGAAACGATTGCCACCTTCCTGCGTACTGAAGATGAAAAATCACAAGATTATAATGCCCTGATTCGTGCCATTCAC
ACCTTGCGTGGCAGTTCATCGATGGCGCAGATTGAACAGATTTTTGAAGCCAGCTCTAAAGTTGAACAGTTATTTAAAAC
CTTGCTACAAGATGAAATAGTCTCGACCTCAAAAGAAACAGCTTTACTGATTCAATATGCCGAGTTCATCAGTGACTATG
TGCATTTATTAGGTCAGGGGAATACCGAAAAACTAGATGCGGTCTATGCCACGTTTGAAGCAGTCTGGAGTGATTATGGC
TTTGCGGTCACTGAAACAGATGCGGTTCAAACCCAAGGTCTAGTGTCCAAACTGGTTGAGCTGGATATTGACCTGTTGCT
CGATGCTGAGTTTGAATTCGATAAACGCGCACAAGTCGATTATCCGGAATATATCCAGGCACTGAGTCAACAGGCTGCAG
AATTACTGGCGCATACTGATAGCCGCGCGGCCAAAGGAATTCATGAATTCACGGCAGATCTGAAATCGGCTTATGATGCC
CTGCTTAAAAAGCCGGTGCTGTTAAACAGCAATTATGCTTATGAACTGTTTGCACAGGCACATCAGGAATTTATTCATTT
ATTTGATACCCTGGCCGCAGGACAGCGCGTCATTCTGAATGATGACATTCAAAAAACTTTAAGTGAACTGTCGGCATTTG
TACAACAGGATCTTGAGATCTTTGCGGAAGATACTGAAACGTCAGGCCTTGAGCCGACCACAGATATTCTCCCAACGGCT
GACACCTTAAGCACAGGCAGCGTAGATTTTGCTGCCTTGAGCCAGCGTATTGCAGCCGATCGTCAACAGCGCGAGAGTGC
TGAAACCAACCGTGATTTCGATGAAGAACTGTTAGGTATCTTTCTGGAAGAAGCCGATGAATTGCTGGCAGGTATTGATG
AAGATCTGAATACCTGGAGCAAAAAACAGGATGATACGACTTCACTGAACAATCTGATGCGTCATTTGCATACCTTAAAA
GGTGGTGCAAACATGATTGCGGCTTCGCATATCGGTTTGATTGCCCATGAACTGGAAAGTATTTATGAACGGGTGATCCG
TCAGCAGATTGCCGTAACACCTGCTTTAATCCAGATTGTCCGTCTGGTACAGGATAACGTGTCCGACCGTATTCAGTCCA
TTCGAGATGATGGCATTGATTATCCGGCGACAGAAGCGGTGGCAATTTTACAAAATATTCAGGCACTACTTTCTGGGCAA
ATGCTGGCTGCTGTTGAAAGCACAACTACTGAATTCAACGTGACCGCGTTAGAGATGCTATCGACTCCTGAAGTGCCATT
CGAAGAATCAGTGGCGACAGAACAGCCTGCAACTGATCTGGCTGAAACAGAAAAATTAGTTGAAATCCCTGGATTTACTG
AAAATCAAGTTGAACGCTCTGAAGAAGATGAGCTGAAATCAATCGTTGAAGAAACCTTCCTCGAAGAGTCTGAAGAAATT
CTGGCCAATGCAGAGAAGCTGCTCAATCAATGGTTTGATCAGCGTAGTGACCGTAGTTTATTACTTCAGTTACAACGTGC
TGCCCACAGTATTAAAGGTGGTGCACGCATGATTGAAACTGAAGAGGTGGCCAGCATTGCCTATGAACTGGAAACCACTT
TCGAGCAGTTTGCAGTTTATCAATTTAACTCGAATGCCTATGATGGCTTATTGCAGAAAACACTGGCCTGGTTAAAACAG
GCAATTTTCCAGCGCGACTATAGCGGTTTTGAGCAGCTTCAAAGCAGTCTGAAAAAGATTGCTTATGTGGACGTCACTGC
GCAATTGCCTGAGCGTCTGGCAAAAACAGAACATCTGGTGGTCAGTACCGACTTTGGTTTTGTTGAGGGTGATGGTACTG
AACCGCCACAGATGATGGGTGAGTGGGCGAATACAGGCAGTAGCGATAGCAATAACGAGATGATTCGTATCTCTGCTGAT
CTGGTCGAGAAGATGATTGACCTGTCGGGTGAGAACTCGATTAACCGTTCGCGGATCGAGATGGATCTGGGTCAGCTTGG
CAATACCCTGAACGAGATGGAACTGGCGATCAAACGACTTGCCGACCAGTTGCGTCGAATGGAAGGCGAGCTGGAATCAC
AGATTATTGCCAAACATGGTTCAGAAAATTCGCGCTATGCCGACTTCGATCCGCTGGAAATGGACCAGTATTCATCGTTG
AACCAGTTATCCAAATCTCTGGCAGAATCAGCATCGGATCTGGTCGATTTCAAGAGCACCTTGGCCGACAAGATTCGTGA
AACTGAAGGTTTATTATTACAACAATCGCGTATTCAGGCCGAGATTCAGGAAAGCCTGATGCGTACCCGTCTGGTGCCGT
TTGACCGGATGTTGCCGCGTTTACAACGTATTGTGCGTCAAACCTCAACCACCTTGAACCGTCCTGCCGAACTGATTGTG
CAGAATACTGAAGGTGAATTGGATCGTAATATTCTGGAACGTCTGGTTACGCCATTTGAACATATGTTGCGTAATGCGAT
TGACCACGGTCTGGAAGATACCGCAGATCGTCTAGCATTGAACAAGCCGGAAGTGGGTTCTATTGTATTGAACATCAGCC
GCCAAGGAACCGATGTCATCGTTTCTTTCAGTGATGATGGCAAGGGGATCGATGCGGAGAAAATTCGTGAGAAAGCCCTC
AGTCTGGATCTGATCAAAGCCGACCAGCCGATTGATCAGGATGAAATACTACAATATATCTTCCATCCTGGTTTCACTAC
CGCAAAAGCAGTCACCCAGATTTCCGGTCGTGGCGTTGGTCTGGACGTGGTACAAAGTGAAATCAAGTTGCTCGGTGGTC
ATGTTTCGGTCAGCTCGGAACTGGGTAAGGGCACGGTCTTTACGATTCGCGTACCGACGACAGTGGCCGTTAGTGATGCC
TTGATGGTGAAAGCGGGCGATCAGCAATATGCAATTTCTCTGGCGCAGATTGACCGAATCGTGCGGATTGCGCCGACCAC
ATTGGAAACTTACTTTAACAGTAAAGACGATTACTTCAAGATTGATGGTGAAAACTACAAGCTGCGTTATCTGTCTGAAT
TTGTCGGTACTCAGCCGATTCCACGTCTGAATAATGTCGGTCATTCATTGCCGGTGCTTCTGATTAAAGGCAACAGCGGC
CAAACCATTGCCTTGCTGGTCGATCAACTGGTGGGTTCACGTGCACAGATTGTGGTGAAACCGATTGGACAGCAGTTTGC
CAACATCGGGGTAGTGGCGGGTGCTACGATTCTGGGTGATGGTCAGGTCTGTCTGATTCTCGATGGCCAGAATATTGCGC
GTCAGATTCAGGCGACACAGCGTGTGAAACAGATGCATGATCAGCGTGATGGTTCGCGTCATTCCAATGCACGTCGTCTG
GTGATGATTGTCGATGACTCGGTGACAGTACGTAAGGTAACTTCGCGTCTGCTTGAACGTCAGGGCTATGACATTGTGAC
CGCCAAAGATGGTGTAGATGCGATCGAGCAGCTAGAAAATGTCAGACCAGATCTGATGCTGCTGGATATCGAAATGCCAC
GTATGGATGGTTTTGAAGTCACCAACCTGGTTCGTCACCATGATATTCACCGTGACTTGCCGATTATCATGATTACGTCG
CGTACTGGTGAGAAACATCGTGAACGTGCATTCAGTCTGGGCGTGACCCACTATATGGGTAAACCGTTCCAGGAAGCTGA
ACTGCTGGCCAATATTCAACAATTAATTGCCGAAAAACAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.835

100

0.62