Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LDO52_RS01905 Genome accession   NZ_CP084300
Coordinates   401267..401902 (-) Length   211 a.a.
NCBI ID   WP_225553640.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396267..406902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS01870 (LDO52_01870) mlaE 396336..397115 (+) 780 WP_074383590.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LDO52_RS01875 (LDO52_01875) - 397115..397792 (+) 678 WP_005094188.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LDO52_RS01880 (LDO52_01880) - 397811..398443 (+) 633 WP_005094187.1 phospholipid-binding protein MlaC -
  LDO52_RS01885 (LDO52_01885) - 398459..398749 (+) 291 WP_005168745.1 STAS domain-containing protein -
  LDO52_RS01890 (LDO52_01890) - 399074..400087 (-) 1014 WP_005168743.1 CorA family divalent cation transporter -
  LDO52_RS01895 (LDO52_01895) - 400240..400830 (+) 591 WP_225553638.1 TIGR00730 family Rossman fold protein -
  LDO52_RS01900 (LDO52_01900) - 400862..401263 (+) 402 WP_005094183.1 NUDIX hydrolase -
  LDO52_RS01905 (LDO52_01905) comF 401267..401902 (-) 636 WP_225553640.1 ComF family protein Machinery gene
  LDO52_RS01910 (LDO52_01910) recG 401889..403934 (-) 2046 WP_180097608.1 ATP-dependent DNA helicase RecG -
  LDO52_RS01915 (LDO52_01915) - 403968..404783 (+) 816 WP_180085774.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24218.34 Da        Isoelectric Point: 8.9917

>NTDB_id=610509 LDO52_RS01905 WP_225553640.1 401267..401902(-) (comF) [Acinetobacter pseudolwoffii strain XMC5X702]
MPMFKLLAQGISKLNTLQPCQLCQTDYQSIYSVCQDCWQQLPWIHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHL
QNLLAGMLLSLELPKVSAIVPMPISTERLAERGYNQSLVLAKHVAKKLNVPIWQPVSRLKQHSQKGLSRLERIEDIQSQF
QISTPSNIRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKIYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=610509 LDO52_RS01905 WP_225553640.1 401267..401902(-) (comF) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGCCTATGTTTAAATTACTGGCACAGGGAATCTCCAAGCTGAATACGCTTCAGCCCTGCCAGTTGTGTCAGACTGATTA
TCAGAGCATTTATTCAGTCTGTCAGGATTGCTGGCAGCAGTTGCCGTGGATACATCAAACCATTCAGCGTCAGGAAATGC
AGTTTCAGATTGCCTGCGATTATGCCTACCCAATGGATCGGTTGATTCAGCTGTTTAAATATGAACAGAAGCTGCATCTG
CAAAATTTACTGGCCGGTATGCTGTTGAGTTTAGAGCTACCCAAAGTCAGTGCAATAGTCCCGATGCCGATCTCGACTGA
ACGCCTGGCCGAACGCGGTTATAATCAATCTCTGGTGCTGGCCAAGCATGTGGCGAAAAAATTGAATGTTCCCATCTGGC
AACCTGTTAGCCGGCTGAAACAGCATTCGCAAAAAGGCTTAAGCCGTCTGGAAAGAATCGAAGATATCCAGTCGCAATTT
CAGATCAGTACACCGTCTAATATTCGTTACCGACGCGTACTGATTATTGATGATGTGGTGACAACCGGCAGTTCGATTCG
GGCACTGAGCCAAACACTTGAACAATTGGGTTGTCAAAAAATTTATGCAGCCTGTCTGGCAGGCGCGCAAATCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

61.538

98.578

0.607
  comF Acinetobacter baumannii strain A118

61.058

98.578

0.602