Detailed information NTG0610494

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDO71_RS19345
• Genome accession: NZ_CP084297
• Coordinates: 3534424..3535284 (+)
• Length: 286 a.a.
• NCBI ID: WP_267461677.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain LHC22-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3529424..3540284

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO71_RS16755 (LDO71_16755)	secG	3530029..3530358 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
LDO71_RS16760 (LDO71_16760)	tpiA	3530371..3531165 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
LDO71_RS16765 (LDO71_16765)	pilB	3531456..3533168 (+)	1713	WP_225545936.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LDO71_RS16770 (LDO71_16770)	pilC	3533198..3534424 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
LDO71_RS19345	pilD	3534424..3535284 (+)	861	WP_267461677.1	prepilin peptidase	Machinery gene
LDO71_RS16785 (LDO71_16785)	coaE	3535286..3535882 (+)	597	WP_225545937.1	dephospho-CoA kinase	-
LDO71_RS16790 (LDO71_16790)	-	3535879..3536793 (-)	915	WP_000075014.1	DMT family transporter	-
LDO71_RS16795 (LDO71_16795)	rlmB	3536829..3537578 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LDO71_RS16800 (LDO71_16800)	-	3537680..3538006 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
LDO71_RS16805 (LDO71_16805)	-	3538083..3539393 (-)	1311	WP_031379556.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32124.54 Da
• Isoelectric Point: 6.9991

>NTDB_id=610494 LDO71_RS19345 WP_267461677.1 3534424..3535284(+) (pilD) [Acinetobacter baumannii strain LHC22-2]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGYCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWLLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=610494 LDO71_RS19345 WP_267461677.1 3534424..3535284(+) (pilD) [Acinetobacter baumannii strain LHC22-2]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTTATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGCTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441