Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LDO71_RS02025 Genome accession   NZ_CP084297
Coordinates   435583..436218 (-) Length   211 a.a.
NCBI ID   WP_065718995.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LHC22-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430583..441218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS01990 (LDO71_01990) mlaE 430916..431695 (+) 780 WP_001091947.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LDO71_RS01995 (LDO71_01995) - 431695..432375 (+) 681 WP_225546098.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LDO71_RS02000 (LDO71_02000) - 432402..433043 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  LDO71_RS02005 (LDO71_02005) - 433055..433342 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  LDO71_RS02010 (LDO71_02010) - 433412..434425 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  LDO71_RS02015 (LDO71_02015) - 434583..435164 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  LDO71_RS02020 (LDO71_02020) - 435179..435580 (+) 402 WP_000849705.1 NUDIX hydrolase -
  LDO71_RS02025 (LDO71_02025) comF 435583..436218 (-) 636 WP_065718995.1 ComF family protein Machinery gene
  LDO71_RS02030 (LDO71_02030) recG 436211..438256 (-) 2046 WP_162284034.1 ATP-dependent DNA helicase RecG -
  LDO71_RS02035 (LDO71_02035) - 438277..439092 (+) 816 WP_225546099.1 NAD-dependent epimerase/dehydratase family protein -
  LDO71_RS02040 (LDO71_02040) adeT2 439172..440158 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24560.68 Da        Isoelectric Point: 9.7140

>NTDB_id=610462 LDO71_RS02025 WP_065718995.1 435583..436218(-) (comF) [Acinetobacter baumannii strain LHC22-2]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLVSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=610462 LDO71_RS02025 WP_065718995.1 435583..436218(-) (comF) [Acinetobacter baumannii strain LHC22-2]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTGTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981