Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RES6_RS03900 Genome accession   NZ_CP084229
Coordinates   801275..801673 (+) Length   132 a.a.
NCBI ID   WP_161511374.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SE3.8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 796275..806673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RES6_RS03870 (RES6_003870) atpD 796553..797965 (+) 1413 WP_037551943.1 F0F1 ATP synthase subunit beta -
  RES6_RS03875 (RES6_003875) - 797986..798387 (+) 402 WP_011275244.1 F0F1 ATP synthase subunit epsilon -
  RES6_RS03880 (RES6_003880) - 798515..798748 (+) 234 WP_053026877.1 DUF1146 family protein -
  RES6_RS03885 (RES6_003885) murA 798853..800118 (+) 1266 WP_161511373.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RES6_RS03890 (RES6_003890) fabZ 800158..800595 (+) 438 WP_016931213.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RES6_RS03895 (RES6_003895) - 800644..801087 (-) 444 WP_011275248.1 YwpF-like family protein -
  RES6_RS03900 (RES6_003900) ssb 801275..801673 (+) 399 WP_161511374.1 single-stranded DNA-binding protein Machinery gene
  RES6_RS03905 (RES6_003905) - 802011..802718 (+) 708 WP_085060560.1 transglycosylase family protein -
  RES6_RS03910 (RES6_003910) tenA 803006..803695 (+) 690 WP_085060559.1 thiaminase II -
  RES6_RS03915 (RES6_003915) thiD 803688..804509 (+) 822 WP_053025534.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RES6_RS03920 (RES6_003920) thiM 804502..805293 (+) 792 WP_161511383.1 hydroxyethylthiazole kinase -
  RES6_RS03925 (RES6_003925) thiE 805295..805933 (+) 639 WP_085060557.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15141.99 Da        Isoelectric Point: 4.7851

>NTDB_id=610189 RES6_RS03900 WP_161511374.1 801275..801673(+) (ssb) [Staphylococcus haemolyticus strain SE3.8]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATDRNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNNLPNTTYDEDAYSFDHLEVIDVN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=610189 RES6_RS03900 WP_161511374.1 801275..801673(+) (ssb) [Staphylococcus haemolyticus strain SE3.8]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAGATAGCTAC
GTTCTGTGTTGCAACTGACCGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGTCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
CGATAATAATCTTCCTAACACCACATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.809

99.242

0.742
  ssb Staphylococcus aureus MW2

74.046

99.242

0.735