Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NML18_RS22105 Genome accession   NZ_CP101269
Coordinates   4556676..4557701 (+) Length   341 a.a.
NCBI ID   WP_104725685.1    Uniprot ID   -
Organism   Escherichia coli strain EC21Z-048     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4551676..4562701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML18_RS22095 (NML18_22100) rpmE 4553907..4554119 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  NML18_RS22100 (NML18_22105) priA 4554322..4556520 (+) 2199 WP_254837342.1 primosomal protein N' Machinery gene
  NML18_RS22105 (NML18_22110) cytR 4556676..4557701 (+) 1026 WP_104725685.1 DNA-binding transcriptional regulator CytR Regulator
  NML18_RS22110 (NML18_22115) ftsN 4557793..4558752 (+) 960 WP_000068830.1 cell division protein FtsN -
  NML18_RS22115 (NML18_22120) hslV 4558845..4559375 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  NML18_RS22120 (NML18_22125) hslU 4559385..4560716 (+) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  NML18_RS22125 (NML18_22130) menA 4560783..4561709 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  NML18_RS22130 (NML18_22135) rraA 4561802..4562287 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  NML18_RS22135 (NML18_22140) zapB 4562372..4562617 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37818.84 Da        Isoelectric Point: 6.8163

>NTDB_id=609841 NML18_RS22105 WP_104725685.1 4556676..4557701(+) (cytR) [Escherichia coli strain EC21Z-048]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNKSRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=609841 NML18_RS22105 WP_104725685.1 4556676..4557701(+) (cytR) [Escherichia coli strain EC21Z-048]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATAAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625