Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LB316_RS10435 Genome accession   NZ_CP084107
Coordinates   2120163..2120558 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2115163..2125558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS10410 (LB316_10405) thiE 2115762..2116403 (-) 642 WP_000483165.1 thiamine phosphate synthase -
  LB316_RS10415 (LB316_10410) thiM 2116405..2117196 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  LB316_RS10420 (LB316_10415) thiD 2117180..2118010 (-) 831 WP_000594962.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LB316_RS10425 (LB316_10420) tenA 2118003..2118692 (-) 690 WP_000396067.1 thiaminase II -
  LB316_RS10430 (LB316_10425) sceD 2119079..2119774 (-) 696 WP_000751996.1 lytic transglycosylase SceD -
  LB316_RS10435 (LB316_10430) ssb 2120163..2120558 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LB316_RS10440 (LB316_10435) - 2120752..2121192 (+) 441 WP_000846746.1 YwpF-like family protein -
  LB316_RS10445 (LB316_10440) fabZ 2121249..2121689 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LB316_RS10450 (LB316_10445) murA 2121723..2122988 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LB316_RS10455 (LB316_10450) - 2123099..2123332 (-) 234 WP_000384520.1 DUF1146 family protein -
  LB316_RS10460 (LB316_10455) - 2123464..2123541 (-) 78 Protein_2023 hypothetical protein -
  LB316_RS10465 (LB316_10460) - 2123928..2124332 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=609594 LB316_RS10435 WP_000932694.1 2120163..2120558(-) (ssb) [Staphylococcus aureus strain CC49/ST49-MSSA]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=609594 LB316_RS10435 WP_000932694.1 2120163..2120558(-) (ssb) [Staphylococcus aureus strain CC49/ST49-MSSA]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992