Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EL277_RS02655 Genome accession   NZ_AP018936
Coordinates   508922..509971 (+) Length   349 a.a.
NCBI ID   WP_000653773.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NU83127     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 503922..514971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL277_RS02625 (SPNU_0494) - 504835..505191 (+) 357 WP_000114428.1 hypothetical protein -
  EL277_RS02630 (SPNU_0495) dnaJ 505593..506729 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  EL277_RS02635 - 507063..507257 (-) 195 WP_001827223.1 hypothetical protein -
  EL277_RS02640 (SPNU_0496) - 507419..507706 (-) 288 WP_000777753.1 hypothetical protein -
  EL277_RS02645 (SPNU_0497) - 507716..508126 (-) 411 WP_001278301.1 HIT family protein -
  EL277_RS02650 (SPNU_0498) pptA 508194..508925 (+) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  EL277_RS02655 (SPNU_0499) pptB 508922..509971 (+) 1050 WP_000653773.1 ABC transporter permease Regulator
  EL277_RS02665 (SPNU_0500) - 510139..510468 (-) 330 WP_000132572.1 hypothetical protein -
  EL277_RS02670 (SPNU_0501) - 510745..511083 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  EL277_RS02675 (SPNU_0502) comE/blpR 511088..511825 (+) 738 WP_001219119.1 response regulator transcription factor Regulator
  EL277_RS02680 (SPNU_0504) - 511839..513168 (+) 1330 Protein_503 sensor histidine kinase -
  EL277_RS02685 (SPNU_0505) blpC 513212..513367 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -
  EL277_RS02690 (SPNU_0506) - 513424..514785 (-) 1362 WP_001069103.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40571.59 Da        Isoelectric Point: 10.0008

>NTDB_id=60959 EL277_RS02655 WP_000653773.1 508922..509971(+) (pptB) [Streptococcus pneumoniae strain NU83127]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLQVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=60959 EL277_RS02655 WP_000653773.1 508922..509971(+) (pptB) [Streptococcus pneumoniae strain NU83127]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTACTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACCTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTTCAAGAA
AAACTAGCCCTTCTAGCCTTACTGGGAGCTGGTTTGGTTTTACAAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment