Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LB316_RS07955 Genome accession   NZ_CP084107
Coordinates   1647582..1648268 (-) Length   228 a.a.
NCBI ID   WP_078064551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1642582..1653268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS07935 (LB316_07930) rpsT 1643496..1643747 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  LB316_RS07940 (LB316_07935) holA 1643792..1644766 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  LB316_RS07945 (LB316_07940) comEC 1644823..1647024 (-) 2202 WP_025174533.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LB316_RS07950 (LB316_07945) - 1647029..1647490 (-) 462 WP_000439693.1 ComE operon protein 2 -
  LB316_RS07955 (LB316_07950) comEA 1647582..1648268 (-) 687 WP_078064551.1 ComEA family DNA-binding protein Machinery gene
  LB316_RS07960 (LB316_07955) - 1648308..1649024 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  LB316_RS07965 (LB316_07960) rsfS 1649027..1649380 (-) 354 WP_001088020.1 ribosome silencing factor -
  LB316_RS07970 (LB316_07965) yqeK 1649381..1649965 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LB316_RS07975 (LB316_07970) nadD 1649955..1650524 (-) 570 WP_000725166.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LB316_RS07980 (LB316_07975) yhbY 1650527..1650817 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  LB316_RS07985 (LB316_07980) aroE 1650821..1651627 (-) 807 WP_000666745.1 shikimate dehydrogenase -
  LB316_RS07990 (LB316_07985) yqeH 1651641..1652741 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=609583 LB316_RS07955 WP_078064551.1 1647582..1648268(-) (comEA) [Staphylococcus aureus strain CC49/ST49-MSSA]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=609583 LB316_RS07955 WP_078064551.1 1647582..1648268(-) (comEA) [Staphylococcus aureus strain CC49/ST49-MSSA]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.684

100

0.987
  comEA Staphylococcus aureus N315

98.684

100

0.987