Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LB316_RS04825 Genome accession   NZ_CP084107
Coordinates   983535..984521 (+) Length   328 a.a.
NCBI ID   WP_000959297.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 978535..989521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS04800 (LB316_04800) opp4B 978748..979710 (+) 963 WP_000593420.1 oligopeptide ABC transporter permease -
  LB316_RS04805 (LB316_04805) opp4C 979722..980603 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  LB316_RS04810 (LB316_04810) trpS 980645..981634 (-) 990 WP_000448931.1 tryptophan--tRNA ligase -
  LB316_RS04815 (LB316_04815) spxA 981929..982324 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  LB316_RS04820 (LB316_04820) mecA 982695..983414 (+) 720 WP_001217728.1 adaptor protein MecA -
  LB316_RS04825 (LB316_04825) coiA 983535..984521 (+) 987 WP_000959297.1 competence protein CoiA family protein Machinery gene
  LB316_RS04830 (LB316_04830) pepF 984569..986377 (+) 1809 WP_000082729.1 oligoendopeptidase F -
  LB316_RS04835 (LB316_04835) tnpA 986972..987457 (+) 486 WP_000093393.1 IS200/IS605 family transposase -
  LB316_RS04840 (LB316_04840) yjbH 987580..988386 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  LB316_RS04845 (LB316_04845) - 988409..988774 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  LB316_RS04850 (LB316_04850) - 988878..989471 (-) 594 WP_000224622.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38616.15 Da        Isoelectric Point: 9.6530

>NTDB_id=609568 LB316_RS04825 WP_000959297.1 983535..984521(+) (coiA) [Staphylococcus aureus strain CC49/ST49-MSSA]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=609568 LB316_RS04825 WP_000959297.1 983535..984521(+) (coiA) [Staphylococcus aureus strain CC49/ST49-MSSA]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.646

100

0.966
  coiA Staphylococcus aureus MW2

96.646

100

0.966