Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RBAU_RS01795 Genome accession   NC_022075
Coordinates   370295..370732 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5033     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 365295..375732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAU_RS01770 (RBAU_0330) - 366315..367451 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  RBAU_RS01775 (RBAU_0331) - 367466..367900 (+) 435 WP_007409358.1 RDD family protein -
  RBAU_RS01780 (RBAU_0332) - 367972..368295 (+) 324 WP_007409357.1 YckD family protein -
  RBAU_RS01785 (RBAU_0333) - 368399..369835 (+) 1437 WP_007409356.1 family 1 glycosylhydrolase -
  RBAU_RS01790 (RBAU_0334) nin/comJ 369876..370274 (-) 399 WP_007409355.1 competence protein ComJ Regulator
  RBAU_RS01795 (RBAU_0335) nucA/comI 370295..370732 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RBAU_RS01800 (RBAU_0336) hxlB 371089..371646 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  RBAU_RS01805 (RBAU_0337) hxlA 371643..372278 (-) 636 WP_007409353.1 3-hexulose-6-phosphate synthase -
  RBAU_RS01810 (RBAU_0338) - 372509..372871 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=60955 RBAU_RS01795 WP_003156588.1 370295..370732(-) (nucA/comI) [Bacillus velezensis UCMB5033]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=60955 RBAU_RS01795 WP_003156588.1 370295..370732(-) (nucA/comI) [Bacillus velezensis UCMB5033]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment