Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   RBAU_RS01790 Genome accession   NC_022075
Coordinates   369876..370274 (-) Length   132 a.a.
NCBI ID   WP_007409355.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5033     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 364876..375274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAU_RS01765 (RBAU_0329) - 365048..366250 (+) 1203 WP_007409360.1 GTP-binding protein -
  RBAU_RS01770 (RBAU_0330) - 366315..367451 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  RBAU_RS01775 (RBAU_0331) - 367466..367900 (+) 435 WP_007409358.1 RDD family protein -
  RBAU_RS01780 (RBAU_0332) - 367972..368295 (+) 324 WP_007409357.1 YckD family protein -
  RBAU_RS01785 (RBAU_0333) - 368399..369835 (+) 1437 WP_007409356.1 family 1 glycosylhydrolase -
  RBAU_RS01790 (RBAU_0334) nin/comJ 369876..370274 (-) 399 WP_007409355.1 competence protein ComJ Regulator
  RBAU_RS01795 (RBAU_0335) nucA/comI 370295..370732 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RBAU_RS01800 (RBAU_0336) hxlB 371089..371646 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  RBAU_RS01805 (RBAU_0337) hxlA 371643..372278 (-) 636 WP_007409353.1 3-hexulose-6-phosphate synthase -
  RBAU_RS01810 (RBAU_0338) - 372509..372871 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14991.96 Da        Isoelectric Point: 4.8001

>NTDB_id=60954 RBAU_RS01790 WP_007409355.1 369876..370274(-) (nin/comJ) [Bacillus velezensis UCMB5033]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKADVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=60954 RBAU_RS01790 WP_007409355.1 369876..370274(-) (nin/comJ) [Bacillus velezensis UCMB5033]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCAGATGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

74.242

100

0.742

Multiple sequence alignment