Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   H8R35_RS01325 Genome accession   NZ_CP084085
Coordinates   263919..264569 (+) Length   216 a.a.
NCBI ID   WP_002886738.1    Uniprot ID   A0AB36G702
Organism   Campylobacter jejuni strain MS2167     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 258919..269569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R35_RS01305 (H8R35_000205) - 259793..261235 (-) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -
  H8R35_RS01310 (H8R35_000206) fbaA 261330..262394 (-) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  H8R35_RS01315 (H8R35_000207) peb4 262394..263215 (-) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  H8R35_RS01320 (H8R35_000208) nth 263296..263922 (+) 627 WP_255020522.1 endonuclease III -
  H8R35_RS01325 (H8R35_000209) CJE0566 263919..264569 (+) 651 WP_002886738.1 DNA/RNA non-specific endonuclease Regulator
  H8R35_RS01330 (H8R35_000210) - 264580..265212 (+) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  H8R35_RS01335 (H8R35_000211) - 265270..265704 (+) 435 WP_002870071.1 EexN family lipoprotein -
  H8R35_RS01340 (H8R35_000212) - 265701..265922 (+) 222 WP_002859102.1 EexN family lipoprotein -
  H8R35_RS01345 (H8R35_000213) cmoA 265912..266622 (-) 711 WP_255020523.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  H8R35_RS01350 (H8R35_000214) ribF 266609..267463 (-) 855 WP_255020524.1 bifunctional riboflavin kinase/FAD synthetase -
  H8R35_RS01355 (H8R35_000215) tlyA 267429..268190 (-) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  H8R35_RS01360 (H8R35_000216) - 268187..269191 (-) 1005 WP_255020632.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.13 Da        Isoelectric Point: 9.6573

>NTDB_id=609466 H8R35_RS01325 WP_002886738.1 263919..264569(+) (CJE0566) [Campylobacter jejuni strain MS2167]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=609466 H8R35_RS01325 WP_002886738.1 263919..264569(+) (CJE0566) [Campylobacter jejuni strain MS2167]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAGCCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63