Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   H8R33_RS06165 Genome accession   NZ_CP084080
Coordinates   1160608..1161792 (+) Length   394 a.a.
NCBI ID   WP_002890768.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2005     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1155608..1166792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS06145 - 1156678..1157280 (+) 603 WP_002860377.1 gamma-glutamyl-CDP-amidate hydrolase -
  H8R33_RS06150 (H8R33_001023) - 1157282..1158043 (+) 762 WP_002875234.1 CTP:phosphoglutamine cytidylyltransferase -
  H8R33_RS06155 cysC 1158033..1158545 (+) 513 WP_002818256.1 cytidine diphosphoramidate kinase -
  H8R33_RS06160 kpsC 1158542..1160611 (+) 2070 WP_057981416.1 capsular polysaccharide biosynthesis protein -
  H8R33_RS06165 (H8R33_001024) kpsS 1160608..1161792 (+) 1185 WP_002890768.1 capsule polysaccharide modification protein KpsS Regulator
  H8R33_RS06170 (H8R33_001025) - 1161865..1162986 (+) 1122 WP_254990558.1 DUF829 domain-containing protein -
  H8R33_RS06175 (H8R33_001026) - 1162983..1164344 (+) 1362 WP_002934898.1 cytochrome P450 -
  H8R33_RS06180 (H8R33_001027) - 1164341..1164760 (+) 420 WP_002780440.1 hypothetical protein -
  H8R33_RS06185 (H8R33_001028) acpS 1164761..1165108 (-) 348 WP_002780441.1 holo-ACP synthase -
  H8R33_RS06190 (H8R33_001029) fliL 1165108..1165644 (-) 537 WP_002780442.1 flagellar basal body-associated protein FliL -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46854.60 Da        Isoelectric Point: 9.9369

>NTDB_id=609401 H8R33_RS06165 WP_002890768.1 1160608..1161792(+) (kpsS) [Campylobacter jejuni strain MS2005]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHTKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=609401 H8R33_RS06165 WP_002890768.1 1160608..1161792(+) (kpsS) [Campylobacter jejuni strain MS2005]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAAAATGAAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATACTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.97

100

0.98