Detailed information NTG0609025

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LCF43_RS07255
• Genome accession: NZ_CP084023
• Coordinates: 1597093..1597938 (+)
• Length: 281 a.a.
• NCBI ID: WP_181829030.1
• Uniprot ID: -
• Organism: Pectobacterium aroidearum strain LJ2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1592093..1602938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCF43_RS07225	gspI	1592486..1592851 (+)	366	WP_015841044.1	type II secretion system minor pseudopilin GspI	-
LCF43_RS07230	gspJ	1592851..1593501 (+)	651	WP_225182249.1	type II secretion system minor pseudopilin GspJ	-
LCF43_RS07235	gspK	1593498..1594484 (+)	987	WP_015841042.1	type II secretion system minor pseudopilin GspK	-
LCF43_RS07240	gspL	1594481..1595758 (+)	1278	WP_225182250.1	type II secretion system protein GspL	-
LCF43_RS07245	gspM	1595755..1596249 (+)	495	WP_181848776.1	type II secretion system protein GspM	-
LCF43_RS07250	-	1596239..1596985 (+)	747	WP_015841039.1	type II secretion system protein N	-
LCF43_RS07255	pilD	1597093..1597938 (+)	846	WP_181829030.1	A24 family peptidase	Machinery gene
LCF43_RS07260	ypdK	1598081..1598155 (-)	75	WP_099606229.1	membrane protein YpdK	-
LCF43_RS07265	-	1598512..1599537 (-)	1026	WP_015841037.1	LLM class flavin-dependent oxidoreductase	-
LCF43_RS07270	-	1600072..1601136 (+)	1065	WP_225182251.1	ABC transporter substrate-binding protein	-
LCF43_RS07275	-	1601133..1602170 (+)	1038	WP_225182252.1	iron ABC transporter permease	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31261.37 Da
• Isoelectric Point: 7.1428

>NTDB_id=609025 LCF43_RS07255 WP_181829030.1 1597093..1597938(+) (pilD) [Pectobacterium aroidearum strain LJ2]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTDVEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLVAGLLWLPGIALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIMNGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=609025 LCF43_RS07255 WP_181829030.1 1597093..1597938(+) (pilD) [Pectobacterium aroidearum strain LJ2]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCCTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATCGAACTGCAAACGG
GTGTGACCGATGTCGAGCATGTGACGAGTTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGTCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATTACGATGCTGGCTTTTCTGGTCGCAGGGTTACTGTGGTTGCCCGGCATAGCATTAT
GCGGGGCGCTGATTCTGCTGTCCTTTCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCACTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTAGTCGTTACTCTCATCTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCTTGGCTGGC
GATTGGCGGCGTGTTCGGTGTGATAATGAACGGACTCTATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.741	96.085	0.488
pilD	Neisseria gonorrhoeae MS11	49.805	91.459	0.456
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	42.701	97.509	0.416
pilD	Acinetobacter nosocomialis M2	42.701	97.509	0.416