Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCR03_RS09315 Genome accession   NZ_CP084008
Coordinates   1994706..1995101 (-) Length   131 a.a.
NCBI ID   WP_001829977.1    Uniprot ID   A0A4Q9W3V8
Organism   Staphylococcus epidermidis strain NBRC 113846     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1989706..2000101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCR03_RS09290 (LCR03_09290) thiE 1990446..1991084 (-) 639 WP_225088279.1 thiamine phosphate synthase -
  LCR03_RS09295 (LCR03_09295) thiM 1991090..1991878 (-) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  LCR03_RS09300 (LCR03_09300) thiD 1991871..1992692 (-) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LCR03_RS09305 (LCR03_09305) tenA 1992685..1993374 (-) 690 WP_001829894.1 thiaminase II -
  LCR03_RS09310 (LCR03_09310) - 1993659..1994318 (-) 660 WP_001829904.1 transglycosylase family protein -
  LCR03_RS09315 (LCR03_09315) ssb 1994706..1995101 (-) 396 WP_001829977.1 single-stranded DNA-binding protein Machinery gene
  LCR03_RS09320 (LCR03_09320) - 1995292..1995732 (+) 441 WP_001829935.1 YwpF-like family protein -
  LCR03_RS09325 (LCR03_09325) fabZ 1996050..1996487 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LCR03_RS09330 (LCR03_09330) murA 1996521..1997786 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LCR03_RS09335 (LCR03_09335) - 1997896..1998129 (-) 234 WP_002456242.1 DUF1146 family protein -
  LCR03_RS09340 (LCR03_09340) - 1998278..1998682 (-) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15158.08 Da        Isoelectric Point: 5.2661

>NTDB_id=608948 LCR03_RS09315 WP_001829977.1 1994706..1995101(-) (ssb) [Staphylococcus epidermidis strain NBRC 113846]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=608948 LCR03_RS09315 WP_001829977.1 1994706..1995101(-) (ssb) [Staphylococcus epidermidis strain NBRC 113846]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9W3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725