Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | LCR03_RS05605 | Genome accession | NZ_CP084008 |
| Coordinates | 1211417..1212289 (+) | Length | 290 a.a. |
| NCBI ID | WP_001829468.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain NBRC 113846 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1179264..1221470 | 1211417..1212289 | within | 0 |
Gene organization within MGE regions
Location: 1179264..1221470
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCR03_RS05465 (LCR03_05465) | rsgA | 1179903..1180778 (+) | 876 | WP_002469378.1 | ribosome small subunit-dependent GTPase A | - |
| LCR03_RS05470 (LCR03_05470) | rpe | 1180779..1181423 (+) | 645 | WP_001830173.1 | ribulose-phosphate 3-epimerase | - |
| LCR03_RS05475 (LCR03_05475) | - | 1181428..1182063 (+) | 636 | WP_001830164.1 | thiamine diphosphokinase | - |
| LCR03_RS05480 (LCR03_05480) | rpmB | 1182146..1182334 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| LCR03_RS05485 (LCR03_05485) | - | 1182692..1183066 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| LCR03_RS05490 (LCR03_05490) | fakA | 1183081..1184739 (+) | 1659 | WP_002456580.1 | fatty acid kinase catalytic subunit FakA | - |
| LCR03_RS05495 (LCR03_05495) | recG | 1184943..1186991 (+) | 2049 | WP_002456579.1 | ATP-dependent DNA helicase RecG | - |
| LCR03_RS05500 (LCR03_05500) | fapR | 1187150..1187710 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| LCR03_RS05505 (LCR03_05505) | plsX | 1187712..1188689 (+) | 978 | WP_002469384.1 | phosphate acyltransferase PlsX | - |
| LCR03_RS05510 (LCR03_05510) | fabD | 1188691..1189617 (+) | 927 | WP_002469385.1 | ACP S-malonyltransferase | - |
| LCR03_RS05515 (LCR03_05515) | fabG | 1189610..1190344 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| LCR03_RS05520 (LCR03_05520) | - | 1190572..1190805 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| LCR03_RS05525 (LCR03_05525) | rnc | 1190920..1191657 (+) | 738 | WP_002456575.1 | ribonuclease III | - |
| LCR03_RS05530 (LCR03_05530) | smc | 1191784..1195353 (+) | 3570 | WP_002497629.1 | chromosome segregation protein SMC | - |
| LCR03_RS05535 (LCR03_05535) | ftsY | 1195350..1196576 (+) | 1227 | WP_002456573.1 | signal recognition particle-docking protein FtsY | - |
| LCR03_RS05540 (LCR03_05540) | - | 1196578..1196910 (+) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| LCR03_RS05545 (LCR03_05545) | ffh | 1196941..1198308 (+) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| LCR03_RS05550 (LCR03_05550) | rpsP | 1198616..1198891 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| LCR03_RS05555 (LCR03_05555) | rimM | 1199018..1199521 (+) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| LCR03_RS05560 (LCR03_05560) | trmD | 1199521..1200258 (+) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| LCR03_RS05565 (LCR03_05565) | rplS | 1200364..1200714 (+) | 351 | WP_225088322.1 | 50S ribosomal protein L19 | - |
| LCR03_RS05570 (LCR03_05570) | - | 1201244..1203847 (-) | 2604 | WP_225088323.1 | YfhO family protein | - |
| LCR03_RS05575 (LCR03_05575) | - | 1203840..1206440 (-) | 2601 | WP_002456571.1 | YfhO family protein | - |
| LCR03_RS05580 (LCR03_05580) | ylqF | 1206769..1207632 (+) | 864 | WP_001829495.1 | ribosome biogenesis GTPase YlqF | - |
| LCR03_RS05585 (LCR03_05585) | - | 1207637..1208407 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| LCR03_RS05590 (LCR03_05590) | sucC | 1208515..1209681 (+) | 1167 | WP_002456569.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| LCR03_RS05595 (LCR03_05595) | sucD | 1209703..1210611 (+) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| LCR03_RS05605 (LCR03_05605) | dprA | 1211417..1212289 (+) | 873 | WP_001829468.1 | DNA-processing protein DprA | Machinery gene |
| LCR03_RS05610 (LCR03_05610) | topA | 1212472..1214541 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| LCR03_RS05615 (LCR03_05615) | trmFO | 1214566..1215873 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| LCR03_RS05620 (LCR03_05620) | xerC | 1216128..1216988 (+) | 861 | WP_002439503.1 | tyrosine recombinase XerC | - |
| LCR03_RS05625 (LCR03_05625) | hslV | 1216992..1217534 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| LCR03_RS05630 (LCR03_05630) | hslU | 1217603..1219006 (+) | 1404 | WP_002469380.1 | ATP-dependent protease ATPase subunit HslU | - |
| LCR03_RS05635 (LCR03_05635) | codY | 1219030..1219803 (+) | 774 | WP_002446289.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| LCR03_RS05640 (LCR03_05640) | rpsB | 1220162..1220950 (+) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33726.62 Da Isoelectric Point: 9.3618
>NTDB_id=608930 LCR03_RS05605 WP_001829468.1 1211417..1212289(+) (dprA) [Staphylococcus epidermidis strain NBRC 113846]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=608930 LCR03_RS05605 WP_001829468.1 1211417..1212289(+) (dprA) [Staphylococcus epidermidis strain NBRC 113846]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |