Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LCH18_RS15960 Genome accession   NZ_CP083947
Coordinates   3292241..3293809 (+) Length   522 a.a.
NCBI ID   WP_224467696.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3287241..3298809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS15940 (LCH18_15940) - 3287716..3289020 (+) 1305 WP_010325700.1 homoserine dehydrogenase -
  LCH18_RS15945 (LCH18_15945) thrC 3289086..3290225 (+) 1140 WP_004692833.1 threonine synthase -
  LCH18_RS15950 (LCH18_15950) - 3290313..3291368 (-) 1056 WP_153041792.1 serine hydrolase -
  LCH18_RS15955 (LCH18_15955) - 3291584..3292219 (+) 636 WP_004692836.1 response regulator -
  LCH18_RS15960 (LCH18_15960) pilS 3292241..3293809 (+) 1569 WP_224467696.1 sensor histidine kinase Regulator
  LCH18_RS15965 (LCH18_15965) pilR 3293882..3295246 (+) 1365 WP_252716331.1 sigma-54-dependent transcriptional regulator Regulator
  LCH18_RS15970 (LCH18_15970) - 3295251..3296426 (-) 1176 WP_224467698.1 S41 family peptidase -
  LCH18_RS15975 (LCH18_15975) gpmI 3296445..3297992 (-) 1548 WP_224467699.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59676.18 Da        Isoelectric Point: 6.3035

>NTDB_id=608776 LCH18_RS15960 WP_224467696.1 3292241..3293809(+) (pilS) [Acinetobacter johnsonii strain CSUSB1]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQTNDPQQELLQNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIQIRVYSYKNLVHIEVCDFGEGVATQDQTTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=608776 LCH18_RS15960 WP_224467696.1 3292241..3293809(+) (pilS) [Acinetobacter johnsonii strain CSUSB1]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCATCTTATCGACTATTTATTGG
CTGTTGTTTGTTGTTGGTTTATCTACTGACCTATGAGCAGTTGTTTTCAAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTGTTTATCGTCGATGTCATTAGCCTCAGTTTACTCACTTTTGCCACCGATGGTCCAAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACACTGGTTTATCAACACTTTATTGGAACACTATTTTCAATTAGTTCACTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCGGTGCGACGTTTTCAAGTCCTTGAAAACTTAAACTTCTA
TCAGTCCCAAGAACTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCATGTGCATTATTGGGCATTTCCCCGATTTATGCCTATGACAAA
TACCCCTTATATAAGGCACAGCCTGATTTATTTGAACTACTCAAATTCGACCAACTGAAAAATGGAGAAAAATTCCAATT
CACATCCCAACTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAACCCACTGGCAGCCATCACGCAAGCCAATGAACTAATGCAAACCAATGATCCACAACAAGAACT
GTTGCAGAACATGATCGCCAAACAAGCCTCAAGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTAATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTATCGAATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCAGCTGAAGCCGAGCACATTCAAATTCGTGTCTATAGCTACAAAAACCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAACCACCCTGTTTCAACCGTTTTTTAGTACATCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCTCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.693

99.808

0.596