Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LCH18_RS01725 Genome accession   NZ_CP083947
Coordinates   379843..380490 (-) Length   215 a.a.
NCBI ID   WP_224468204.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374843..385490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS01690 (LCH18_01690) mlaE 375185..375964 (+) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LCH18_RS01695 (LCH18_01695) - 375964..376638 (+) 675 WP_224468200.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LCH18_RS01700 (LCH18_01700) - 376659..377294 (+) 636 WP_004691364.1 phospholipid-binding protein MlaC -
  LCH18_RS01705 (LCH18_01705) - 377306..377593 (+) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  LCH18_RS01710 (LCH18_01710) - 377676..378689 (-) 1014 WP_004691361.1 CorA family divalent cation transporter -
  LCH18_RS01715 (LCH18_01715) - 378842..379441 (+) 600 WP_224468202.1 TIGR00730 family Rossman fold protein -
  LCH18_RS01720 (LCH18_01720) - 379438..379842 (+) 405 WP_094148657.1 NUDIX hydrolase -
  LCH18_RS01725 (LCH18_01725) comF 379843..380490 (-) 648 WP_224468204.1 ComF family protein Machinery gene
  LCH18_RS01730 (LCH18_01730) recG 380477..382522 (-) 2046 WP_224468205.1 ATP-dependent DNA helicase RecG -
  LCH18_RS01735 (LCH18_01735) - 382556..383371 (+) 816 WP_224468207.1 NAD-dependent epimerase/dehydratase family protein -
  LCH18_RS01740 (LCH18_01740) - 383563..383796 (+) 234 WP_224469398.1 DUF6500 family protein -
  LCH18_RS01745 (LCH18_01745) - 383981..384358 (+) 378 WP_029575123.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24810.06 Da        Isoelectric Point: 9.4138

>NTDB_id=608749 LCH18_RS01725 WP_224468204.1 379843..380490(-) (comF) [Acinetobacter johnsonii strain CSUSB1]
MPMFSHLLHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTVEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIQQQ
FKIDPQQRQYAKLYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=608749 LCH18_RS01725 WP_224468204.1 379843..380490(-) (comF) [Acinetobacter johnsonii strain CSUSB1]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTGCTACACAAAGCACAGCCTTGTCAGTTGTGTGGGATTGT
ACGCGCAGATCTACATTCGGTCTGTCTGGACTGCTGGCAACAACTCCCACTGCATCCACAGACCGTTGAAAAACAAGAAC
TGAGTATTCATGTCGCAGGACAGTATCAATATCCTTTAGATCACCTTATTCAGCAGTTTAAATATGAACAACAACTGCAT
TGGCAGCCTTTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCTAAAGTACAAGCAATTGTTCCGATGCCGATTTCGAC
TCAGCGTTTAGCGGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTAAATGTTCCCATTT
GGCAACCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTAGAACGCTTAGATCAAATTCAACAACAG
TTTAAAATCGATCCTCAGCAGCGCCAGTACGCAAAACTCTACCGGCGTGTTTTGATTTTAGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

57.732

90.233

0.521
  comF Acinetobacter baumannii D1279779

57.732

90.233

0.521