Detailed information NTG0608701

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NMD25_RS21025
• Genome accession: NZ_CP101010
• Coordinates: 4347911..4348936 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain ET76
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4342911..4353936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD25_RS21005 (NMD25_20875)	metJ	4343972..4344289 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NMD25_RS21010 (NMD25_20880)	yiiX	4344473..4345081 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NMD25_RS21015 (NMD25_20885)	rpmE	4345142..4345354 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NMD25_RS21020 (NMD25_20890)	priA	4345557..4347755 (+)	2199	WP_001424430.1	primosomal protein N'	Machinery gene
NMD25_RS21025 (NMD25_20895)	cytR	4347911..4348936 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NMD25_RS21030 (NMD25_20900)	ftsN	4349028..4349987 (+)	960	WP_000068828.1	cell division protein FtsN	-
NMD25_RS21035 (NMD25_20905)	hslV	4350080..4350610 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NMD25_RS21040 (NMD25_20910)	hslU	4350620..4351951 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NMD25_RS21045 (NMD25_20915)	menA	4352018..4352944 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NMD25_RS21050 (NMD25_20920)	rraA	4353037..4353522 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NMD25_RS21055 (NMD25_20925)	zapB	4353607..4353852 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=608701 NMD25_RS21025 WP_000644904.1 4347911..4348936(+) (cytR) [Escherichia coli strain ET76]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=608701 NMD25_RS21025 WP_000644904.1 4347911..4348936(+) (cytR) [Escherichia coli strain ET76]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628