Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LCH16_RS12715 Genome accession   NZ_CP083943
Coordinates   2628598..2629365 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain CSUSB3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2623598..2634365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS12695 (LCH16_12695) - 2623800..2624612 (-) 813 WP_015417839.1 pyruvate, water dikinase regulatory protein -
  LCH16_RS12700 (LCH16_12700) ccpN 2624638..2625276 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  LCH16_RS12705 (LCH16_12705) glyS 2625377..2627416 (-) 2040 WP_224462756.1 glycine--tRNA ligase subunit beta -
  LCH16_RS12710 (LCH16_12710) glyQ 2627409..2628296 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  LCH16_RS12715 (LCH16_12715) recO 2628598..2629365 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  LCH16_RS12720 (LCH16_12720) - 2629402..2629545 (-) 144 WP_007408286.1 YqzL family protein -
  LCH16_RS12725 (LCH16_12725) era 2629701..2630606 (-) 906 WP_007408285.1 GTPase Era -
  LCH16_RS12730 (LCH16_12730) - 2630587..2630997 (-) 411 WP_003152976.1 cytidine deaminase -
  LCH16_RS12735 (LCH16_12735) - 2631121..2631495 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  LCH16_RS12740 (LCH16_12740) ybeY 2631476..2631949 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  LCH16_RS12745 (LCH16_12745) - 2631950..2634082 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=608686 LCH16_RS12715 WP_007408287.1 2628598..2629365(-) (recO) [Bacillus velezensis strain CSUSB3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=608686 LCH16_RS12715 WP_007408287.1 2628598..2629365(-) (recO) [Bacillus velezensis strain CSUSB3]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCAGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATATGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89