Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LCH16_RS12220 Genome accession   NZ_CP083943
Coordinates   2545846..2547576 (-) Length   576 a.a.
NCBI ID   WP_003153174.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2540846..2552576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS12195 (LCH16_12195) - 2541265..2541477 (+) 213 WP_007408362.1 spore germination protein -
  LCH16_RS12200 (LCH16_12200) - 2541603..2541815 (+) 213 WP_003153181.1 spore germination protein -
  LCH16_RS12205 (LCH16_12205) alr 2541991..2543172 (+) 1182 WP_012117960.1 alanine racemase -
  LCH16_RS12210 (LCH16_12210) spo0A 2543321..2544121 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  LCH16_RS12215 (LCH16_12215) spoIVB 2544402..2545682 (-) 1281 WP_014305394.1 SpoIVB peptidase -
  LCH16_RS12220 (LCH16_12220) recN 2545846..2547576 (-) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  LCH16_RS12225 (LCH16_12225) ahrC 2547608..2548057 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  LCH16_RS12230 (LCH16_12230) - 2548154..2548999 (-) 846 WP_003153172.1 TlyA family RNA methyltransferase -
  LCH16_RS12235 (LCH16_12235) dxs 2548996..2550897 (-) 1902 WP_014305395.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LCH16_RS12240 (LCH16_12240) - 2551041..2551931 (-) 891 WP_014305396.1 polyprenyl synthetase family protein -
  LCH16_RS12245 (LCH16_12245) - 2551921..2552175 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64051.85 Da        Isoelectric Point: 4.7301

>NTDB_id=608677 LCH16_RS12220 WP_003153174.1 2545846..2547576(-) (recN) [Bacillus velezensis strain CSUSB3]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELQSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=608677 LCH16_RS12220 WP_003153174.1 2545846..2547576(-) (recN) [Bacillus velezensis strain CSUSB3]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGACGCGGCTCGTCCGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTATTGGACAGCGGTCATCCCGTTTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGATGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAACACTTGGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAACTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTACAATGCGCTCCGCAGCGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCCTATTATCTGCTTGAGGATGCAACCTTTCAAATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCTAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCCCT
GAAGAAGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCATGGGCCA
AGAAACTGGCGGAAGCGATTCATCAGGAATTACAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTTAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATCGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACGCATGTCA
CGCCGCTTTCCAAGCAGGATAAGGTAGCGGAAATCGGCCGCATGATTGCGGGTGTTGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.715

100

0.887