Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LCH16_RS12210 Genome accession   NZ_CP083943
Coordinates   2543321..2544121 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain CSUSB3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2538321..2549121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS12180 (LCH16_12180) - 2538861..2539493 (+) 633 WP_007408365.1 helix-turn-helix domain-containing protein -
  LCH16_RS12185 (LCH16_12185) - 2539790..2539927 (+) 138 WP_168768911.1 hypothetical protein -
  LCH16_RS12190 (LCH16_12190) - 2540021..2541139 (+) 1119 WP_031378952.1 NADH-dependent flavin oxidoreductase -
  LCH16_RS12195 (LCH16_12195) - 2541265..2541477 (+) 213 WP_007408362.1 spore germination protein -
  LCH16_RS12200 (LCH16_12200) - 2541603..2541815 (+) 213 WP_003153181.1 spore germination protein -
  LCH16_RS12205 (LCH16_12205) alr 2541991..2543172 (+) 1182 WP_012117960.1 alanine racemase -
  LCH16_RS12210 (LCH16_12210) spo0A 2543321..2544121 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  LCH16_RS12215 (LCH16_12215) spoIVB 2544402..2545682 (-) 1281 WP_014305394.1 SpoIVB peptidase -
  LCH16_RS12220 (LCH16_12220) recN 2545846..2547576 (-) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  LCH16_RS12225 (LCH16_12225) ahrC 2547608..2548057 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  LCH16_RS12230 (LCH16_12230) - 2548154..2548999 (-) 846 WP_003153172.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=608676 LCH16_RS12210 WP_003153177.1 2543321..2544121(-) (spo0A) [Bacillus velezensis strain CSUSB3]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=608676 LCH16_RS12210 WP_003153177.1 2543321..2544121(-) (spo0A) [Bacillus velezensis strain CSUSB3]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCCC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGTATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97