Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LCH16_RS07610 Genome accession   NZ_CP083943
Coordinates   1469127..1469735 (+) Length   202 a.a.
NCBI ID   WP_060675396.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1464127..1474735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS07590 (LCH16_07590) - 1465264..1465509 (+) 246 WP_003154596.1 YkuS family protein -
  LCH16_RS07595 (LCH16_07595) - 1465640..1466992 (+) 1353 WP_060675290.1 IS1182 family transposase -
  LCH16_RS07600 (LCH16_07600) - 1467123..1467929 (-) 807 WP_060675394.1 mechanosensitive ion channel family protein -
  LCH16_RS07605 (LCH16_07605) - 1468218..1468676 (+) 459 WP_060675395.1 TlpA disulfide reductase family protein -
  LCH16_RS07610 (LCH16_07610) rok 1469127..1469735 (+) 609 WP_060675396.1 transcriptional regulator Rok Regulator
  LCH16_RS07615 (LCH16_07615) - 1469756..1470748 (-) 993 WP_060675397.1 hypothetical protein -
  LCH16_RS07620 (LCH16_07620) - 1470894..1471496 (+) 603 WP_039251605.1 molybdenum cofactor guanylyltransferase -
  LCH16_RS07625 (LCH16_07625) - 1471548..1472567 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  LCH16_RS07630 (LCH16_07630) glp 1472585..1473877 (+) 1293 WP_015417375.1 gephyrin-like molybdotransferase Glp -
  LCH16_RS07635 (LCH16_07635) mobB 1473838..1474359 (+) 522 WP_039063003.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22896.92 Da        Isoelectric Point: 9.4832

>NTDB_id=608668 LCH16_RS07610 WP_060675396.1 1469127..1469735(+) (rok) [Bacillus velezensis strain CSUSB3]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTANDTAAE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=608668 LCH16_RS07610 WP_060675396.1 1469127..1469735(+) (rok) [Bacillus velezensis strain CSUSB3]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

96.04

0.827