Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LCH16_RS05800 Genome accession   NZ_CP083943
Coordinates   1150907..1151860 (+) Length   317 a.a.
NCBI ID   WP_015417205.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1145907..1156860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS05775 (LCH16_05775) argF 1147725..1148696 (+) 972 WP_224463087.1 ornithine carbamoyltransferase -
  LCH16_RS05780 (LCH16_05780) - 1148772..1148951 (+) 180 WP_003155070.1 YjzC family protein -
  LCH16_RS05785 (LCH16_05785) - 1148988..1149173 (-) 186 WP_007409129.1 YjzD family protein -
  LCH16_RS05790 (LCH16_05790) - 1149434..1150168 (+) 735 WP_080130436.1 hypothetical protein -
  LCH16_RS05795 (LCH16_05795) - 1150251..1150817 (+) 567 WP_224463089.1 hypothetical protein -
  LCH16_RS05800 (LCH16_05800) med 1150907..1151860 (+) 954 WP_015417205.1 BMP family ABC transporter substrate-binding protein Regulator
  LCH16_RS05805 (LCH16_05805) comZ 1151873..1152064 (+) 192 WP_003155061.1 ComZ family protein Regulator
  LCH16_RS05810 (LCH16_05810) - 1152093..1152311 (-) 219 WP_007409123.1 hypothetical protein -
  LCH16_RS05815 (LCH16_05815) - 1152479..1153417 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  LCH16_RS05820 (LCH16_05820) fabF 1153440..1154678 (+) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  LCH16_RS05825 (LCH16_05825) - 1154761..1155546 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  LCH16_RS05830 (LCH16_05830) - 1155720..1156706 (+) 987 WP_224463091.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35328.96 Da        Isoelectric Point: 4.6686

>NTDB_id=608659 LCH16_RS05800 WP_015417205.1 1150907..1151860(+) (med) [Bacillus velezensis strain CSUSB3]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGSLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=608659 LCH16_RS05800 WP_015417205.1 1150907..1151860(+) (med) [Bacillus velezensis strain CSUSB3]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACAGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAACAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TTCGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATGAACTACCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.233

100

0.782