Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LCH16_RS05805 Genome accession   NZ_CP083943
Coordinates   1151873..1152064 (+) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus velezensis strain CSUSB3     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1146873..1157064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS05775 (LCH16_05775) argF 1147725..1148696 (+) 972 WP_224463087.1 ornithine carbamoyltransferase -
  LCH16_RS05780 (LCH16_05780) - 1148772..1148951 (+) 180 WP_003155070.1 YjzC family protein -
  LCH16_RS05785 (LCH16_05785) - 1148988..1149173 (-) 186 WP_007409129.1 YjzD family protein -
  LCH16_RS05790 (LCH16_05790) - 1149434..1150168 (+) 735 WP_080130436.1 hypothetical protein -
  LCH16_RS05795 (LCH16_05795) - 1150251..1150817 (+) 567 WP_224463089.1 hypothetical protein -
  LCH16_RS05800 (LCH16_05800) med 1150907..1151860 (+) 954 WP_015417205.1 BMP family ABC transporter substrate-binding protein Regulator
  LCH16_RS05805 (LCH16_05805) comZ 1151873..1152064 (+) 192 WP_003155061.1 ComZ family protein Regulator
  LCH16_RS05810 (LCH16_05810) - 1152093..1152311 (-) 219 WP_007409123.1 hypothetical protein -
  LCH16_RS05815 (LCH16_05815) - 1152479..1153417 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  LCH16_RS05820 (LCH16_05820) fabF 1153440..1154678 (+) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  LCH16_RS05825 (LCH16_05825) - 1154761..1155546 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  LCH16_RS05830 (LCH16_05830) - 1155720..1156706 (+) 987 WP_224463091.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=608660 LCH16_RS05805 WP_003155061.1 1151873..1152064(+) (comZ) [Bacillus velezensis strain CSUSB3]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=608660 LCH16_RS05805 WP_003155061.1 1151873..1152064(+) (comZ) [Bacillus velezensis strain CSUSB3]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794