Detailed information NTG0608620

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NMD26_RS21160
• Genome accession: NZ_CP101005
• Coordinates: 4327294..4328319 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain ET82
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4322294..4333319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD26_RS21140 (NMD26_20980)	metJ	4323355..4323672 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NMD26_RS21145 (NMD26_20985)	yiiX	4323856..4324464 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NMD26_RS21150 (NMD26_20990)	rpmE	4324525..4324737 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NMD26_RS21155 (NMD26_20995)	priA	4324940..4327138 (+)	2199	WP_094323378.1	primosomal protein N'	Machinery gene
NMD26_RS21160 (NMD26_21000)	cytR	4327294..4328319 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NMD26_RS21165 (NMD26_21005)	ftsN	4328411..4329370 (+)	960	WP_370620990.1	cell division protein FtsN	-
NMD26_RS21170 (NMD26_21010)	hslV	4329463..4329993 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NMD26_RS21175 (NMD26_21015)	hslU	4330003..4331334 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NMD26_RS21180 (NMD26_21020)	menA	4331401..4332327 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NMD26_RS21185 (NMD26_21025)	rraA	4332420..4332905 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NMD26_RS21190 (NMD26_21030)	zapB	4332990..4333235 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=608620 NMD26_RS21160 WP_000644904.1 4327294..4328319(+) (cytR) [Escherichia coli strain ET82]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=608620 NMD26_RS21160 WP_000644904.1 4327294..4328319(+) (cytR) [Escherichia coli strain ET82]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628