Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JF568_RS11105 Genome accession   NZ_CP083931
Coordinates   2285323..2286126 (+) Length   267 a.a.
NCBI ID   WP_097114567.1    Uniprot ID   -
Organism   Alysiella filiformis DSM 16848     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 2280323..2291126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF568_RS11090 (JF568_11090) - 2281231..2282013 (+) 783 WP_097114570.1 ADP-ribosylglycohydrolase family protein -
  JF568_RS11095 (JF568_11095) ushA 2282346..2283992 (+) 1647 WP_097114569.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA -
  JF568_RS11100 (JF568_11100) rluD 2284206..2285324 (-) 1119 WP_097114568.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JF568_RS11105 (JF568_11105) comL 2285323..2286126 (+) 804 WP_097114567.1 outer membrane protein assembly factor BamD Machinery gene
  JF568_RS11110 (JF568_11110) - 2286203..2286544 (+) 342 WP_097114566.1 SEL1-like repeat protein -
  JF568_RS11115 (JF568_11115) mgtE 2286769..2288211 (-) 1443 WP_097114565.1 magnesium transporter -
  JF568_RS11120 (JF568_11120) - 2288553..2289596 (+) 1044 WP_097114564.1 zinc-dependent alcohol dehydrogenase family protein -
  JF568_RS11125 (JF568_11125) - 2289961..2290683 (-) 723 WP_097114563.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31039.95 Da        Isoelectric Point: 7.2695

>NTDB_id=608592 JF568_RS11105 WP_097114567.1 2285323..2286126(+) (comL) [Alysiella filiformis DSM 16848]
MKNFLLVISVAAALSACAAKGTVDKEAQKTQNWTIDQLYNEARNELNGNNYTRAVTLYELLRSREPDGRYAEQAGIETAY
AHYKNEEKEKALAAIARFQQHFPASVDMDYALYLKGLVLFDEDQSFLNRLASQDWSDRDPAANRQAFYAFEELVKKYPQS
KYADDSRKRMSQLVDALGGHEIAIARYYAKRGAWVAANNRAQRVIEQFQNTRYVEEALAIMVFSYKKMDKPQLAEDAERV
LQKNFPQSPYLQKDWVPDDMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=608592 JF568_RS11105 WP_097114567.1 2285323..2286126(+) (comL) [Alysiella filiformis DSM 16848]
ATGAAAAATTTTCTGTTGGTGATTTCGGTTGCGGCAGCTTTATCGGCGTGCGCAGCCAAAGGTACGGTTGATAAAGAAGC
GCAAAAAACGCAAAACTGGACAATAGACCAGCTTTACAATGAAGCGCGTAACGAACTCAATGGCAACAATTATACGCGAG
CCGTTACATTATATGAACTGTTGCGTTCACGCGAACCCGATGGGCGTTACGCCGAACAAGCAGGCATTGAAACCGCCTAT
GCCCATTACAAAAATGAAGAAAAAGAAAAAGCCTTGGCAGCCATTGCCCGATTCCAACAGCATTTTCCAGCCAGCGTGGA
CATGGATTATGCTTTATATTTGAAAGGCTTGGTGCTGTTTGATGAAGACCAATCATTTTTAAACCGTTTGGCATCGCAAG
ACTGGTCAGACCGCGACCCAGCAGCCAATCGCCAAGCGTTTTACGCCTTTGAAGAATTGGTCAAAAAATACCCACAAAGC
AAATATGCCGATGACAGCCGCAAACGCATGTCGCAGTTGGTGGACGCGCTGGGCGGACACGAAATTGCCATTGCCCGATA
TTATGCCAAACGCGGCGCATGGGTTGCCGCCAACAATCGCGCCCAACGTGTGATTGAACAATTCCAAAACACCCGCTATG
TGGAAGAAGCCTTGGCAATCATGGTGTTCAGCTACAAAAAAATGGACAAACCCCAGTTGGCAGAAGATGCCGAGCGTGTG
TTGCAGAAAAATTTCCCACAAAGCCCCTATTTGCAAAAAGATTGGGTGCCTGATGATATGCCTTGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(36-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

63.91

99.625

0.637
  comL Neisseria meningitidis MC58

63.91

99.625

0.637