Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JF634_RS10455 Genome accession   NZ_CP083930
Coordinates   2107798..2108604 (-) Length   268 a.a.
NCBI ID   WP_040629223.1    Uniprot ID   -
Organism   Simonsiella muelleri strain DSM 2579     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102798..2113604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF634_RS10435 (JF634_10435) - 2103290..2104357 (-) 1068 WP_002642560.1 Fic family protein -
  JF634_RS10440 (JF634_10440) - 2104515..2105528 (-) 1014 WP_002642559.1 ABC transporter permease -
  JF634_RS10445 (JF634_10445) ettA 2105622..2107295 (-) 1674 WP_002642558.1 energy-dependent translational throttle protein EttA -
  JF634_RS10450 (JF634_10450) - 2107399..2107605 (-) 207 WP_158666820.1 hypothetical protein -
  JF634_RS10455 (JF634_10455) comL 2107798..2108604 (-) 807 WP_040629223.1 outer membrane protein assembly factor BamD Machinery gene
  JF634_RS10460 (JF634_10460) rluD 2108603..2109721 (+) 1119 WP_002642556.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JF634_RS10465 (JF634_10465) iscA 2109874..2110194 (-) 321 WP_002642555.1 iron-sulfur cluster assembly protein IscA -
  JF634_RS10470 (JF634_10470) iscU 2110267..2110650 (-) 384 WP_002642554.1 Fe-S cluster assembly scaffold IscU -
  JF634_RS10475 (JF634_10475) - 2110711..2110905 (-) 195 WP_002642553.1 hypothetical protein -
  JF634_RS10480 (JF634_10480) - 2110945..2111544 (-) 600 WP_002642552.1 Fic family protein -
  JF634_RS10485 (JF634_10485) - 2111537..2111731 (-) 195 WP_002642551.1 hypothetical protein -
  JF634_RS10490 (JF634_10490) - 2111784..2112446 (-) 663 WP_002642550.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31097.40 Da        Isoelectric Point: 9.7764

>NTDB_id=608569 JF634_RS10455 WP_040629223.1 2107798..2108604(-) (comL) [Simonsiella muelleri strain DSM 2579]
MKKFLFSVVVVAALSGCAANQSKISKDAQITQNWTADQLYSEARNELNSGNYTRATKLYELLRARQPEGRYIEQSLLDTA
YAQYKNEEPEKALIALARFKQNYPASRDMDYALYLKGLVLFAEEQSFLRKLASQDWADRDPASNRKAYYAFEELVKKYPT
SKYAADATKRMAKLVDALGGHEIAIARYYAKRGAYVAANNRAQRVIENFQNTRFVEESLAIMIFTYKKMDKPRLAEDVRQ
VLQHNFPNSPYLQKGWVADDMPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=608569 JF634_RS10455 WP_040629223.1 2107798..2108604(-) (comL) [Simonsiella muelleri strain DSM 2579]
ATGAAAAAATTTCTATTTAGTGTTGTGGTTGTGGCTGCACTTTCAGGCTGTGCCGCCAACCAAAGTAAAATCAGTAAAGA
CGCACAAATCACACAAAATTGGACTGCTGACCAACTCTATAGCGAAGCACGCAATGAATTAAATAGCGGTAATTATACGC
GAGCCACCAAATTATATGAACTTTTACGCGCAAGGCAGCCTGAAGGGCGCTACATTGAACAATCTTTGTTAGACACCGCC
TACGCCCAATACAAAAATGAAGAACCCGAAAAAGCCTTAATTGCATTGGCGCGTTTTAAACAAAATTATCCTGCCAGCCG
CGATATGGACTACGCTTTGTATTTGAAAGGCTTGGTATTATTCGCCGAAGAGCAATCGTTTTTACGCAAATTGGCATCGC
AAGATTGGGCAGACCGCGACCCTGCATCCAACCGCAAAGCCTATTACGCATTTGAAGAGCTGGTCAAAAAATACCCTACC
AGCAAATACGCAGCAGATGCCACTAAACGCATGGCAAAATTAGTGGATGCGTTGGGTGGGCATGAAATTGCCATCGCTCG
CTATTATGCCAAACGCGGTGCATACGTTGCTGCCAATAATCGCGCTCAACGCGTGATTGAGAATTTCCAAAATACGCGTT
TTGTAGAAGAATCTTTGGCAATCATGATTTTTACCTACAAAAAAATGGACAAACCTCGATTAGCAGAAGATGTGCGTCAA
GTTCTGCAACACAATTTCCCCAATAGCCCATATTTACAAAAGGGTTGGGTAGCTGATGATATGCCATGGTGGCGTTATTG
GAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

64.045

99.627

0.638
  comL Neisseria gonorrhoeae MS11

63.296

99.627

0.631