Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KE3_RS03095 Genome accession   NC_021900
Coordinates   574453..576255 (+) Length   600 a.a.
NCBI ID   WP_020916433.1    Uniprot ID   -
Organism   Streptococcus lutetiensis 033     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 569453..581255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS03070 (KE3_0623) queA 570113..571141 (-) 1029 WP_020916428.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  KE3_RS03075 (KE3_0624) - 571305..571811 (+) 507 WP_020916429.1 VIT1/CCC1 transporter family protein -
  KE3_RS03080 (KE3_0625) nagB 571944..572651 (+) 708 WP_020916430.1 glucosamine-6-phosphate deaminase -
  KE3_RS03085 (KE3_0626) - 572725..573441 (+) 717 WP_020916431.1 pseudouridine synthase -
  KE3_RS03090 (KE3_0627) coiA 573491..574453 (+) 963 WP_020916432.1 competence protein CoiA Machinery gene
  KE3_RS03095 (KE3_0628) pepF 574453..576255 (+) 1803 WP_020916433.1 oligoendopeptidase F Regulator
  KE3_RS03100 (KE3_0629) - 576324..576821 (+) 498 WP_020916434.1 GNAT family N-acetyltransferase -
  KE3_RS03105 (KE3_0630) - 576841..577452 (+) 612 WP_020916435.1 HAD-IA family hydrolase -
  KE3_RS03110 (KE3_0631) - 577500..578201 (+) 702 WP_020916436.1 O-methyltransferase -
  KE3_RS03115 (KE3_0632) - 578271..579332 (+) 1062 WP_020916437.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69085.17 Da        Isoelectric Point: 4.7843

>NTDB_id=60822 KE3_RS03095 WP_020916433.1 574453..576255(+) (pepF) [Streptococcus lutetiensis 033]
MSDNRSHIDEKYKWDLSTVFATDDAWEAELAKLDAGLEDAKKYKGHLTQSSKNLLTMTEHYLDLSRRLEKVYVYASMKND
QDTTVAKYQEYQAKATALYAKYSEVFAFYEPELMKLSAEDFAAFVAETPALSAYTHFFEQLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPEVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQFQHTYAKTLQTNVKVH
NYDARVHHFKSAREAALSANFIPEAVYDTLIDRVNAHLSLLHRYVALRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLAIFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHFLDGFKGTIFRQAQFAEFEDMIHKADQAGEVLTSEY
LNNLYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQVDIDRYLDYLKAGNSDYPL
NVIEKAGVDMTSSDYLDAAFKIFEDRLNELEALVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=60822 KE3_RS03095 WP_020916433.1 574453..576255(+) (pepF) [Streptococcus lutetiensis 033]
ATGTCAGATAATCGTAGTCATATCGATGAAAAATATAAATGGGATCTAAGCACTGTTTTTGCGACTGATGACGCTTGGGA
GGCTGAATTAGCTAAGTTAGATGCTGGTTTAGAAGATGCTAAAAAATACAAAGGTCACTTGACGCAATCAAGTAAGAATT
TGCTAACTATGACGGAGCATTATCTTGATTTGTCACGCAGATTGGAAAAAGTTTACGTCTATGCATCAATGAAAAATGAC
CAAGATACAACAGTGGCAAAATACCAAGAATACCAAGCTAAAGCCACAGCACTTTATGCTAAATACAGTGAAGTCTTTGC
TTTTTACGAACCAGAATTGATGAAATTATCAGCTGAAGATTTTGCGGCATTTGTTGCTGAGACGCCAGCACTATCAGCTT
ATACGCATTTCTTTGAACAACTTTTCAAACGCCAAGCACATGTCTTGTCACAAAAAGAAGAAGAACTCTTAGCTGGTGCA
CACGAAATTTTTGGTGCTGCTGGTGAAACTTTTGAAATTCTGGATAATGCTGATATTGTTTTCCCAGAGGTTTTAGATGA
TGAAGGCAATGAGGTACAATTAACACATGGTAATTTCATTAGTCTTTTGGAATCAAAAAATCGCGACGTCCGAAAAGCAG
CTTATGAAGCGATGTATGCCACTTATGAACAATTCCAACACACTTACGCTAAGACATTACAGACAAATGTTAAGGTTCAT
AACTATGATGCGCGTGTTCACCACTTCAAGTCAGCACGTGAGGCAGCACTTTCTGCTAACTTCATTCCAGAAGCAGTTTA
TGATACATTGATTGACCGTGTGAATGCACACTTGTCACTGCTTCATCGTTATGTGGCACTTCGTAAGAAAGTTCTTAAAT
TGGACGATTTGAAAATGTATGATATTCATACACCATTGTCTGAAATGGATATGAGTTTCACTTATGAAGAAGCTTTGAAA
AAAGCAGAAGAAGTTTTGGCTATCTTCGGTAAAGATTATTCTGAACGTGTTCACCGTGCTTTCACAGAACGTTGGATTGA
CGTTCATGTCAATAAAGGAAAACGCTCAGGAGCTTATTCTGGTGGGGCTTACGATACCAACGCCTTTATGCTTTTGAACT
GGCAAGATACGCTTGATAATCTGTTTACTTTGGTACATGAAACTGGGCACAGCCTTCATTCAACATTTACTCGTGAAAAT
CAACCGTATGTCTACGGTGATTACAGCATTTTCTTAGCTGAAATTGCTTCAACAACCAATGAAAATATTTTAACGGAAAC
GCTTTTGAAAGAAGTTGACGATGATAAAGCTCGCTTTGCGATTTTGAATCATTTCTTGGATGGTTTTAAAGGAACAATTT
TCCGTCAAGCACAATTTGCAGAGTTTGAAGATATGATTCATAAAGCAGACCAAGCTGGTGAAGTATTGACAAGTGAATAC
CTTAACAATCTTTATGCAGACCTAAATGAAAAATATTATGGTCTTAGCAAGGAAGACAATCCGGAAATTCAATACGAATG
GGCACGTATTCCGCATTTCTACTACAACTATTATGTTTATCAATACGCAACAGGTTTTGCAGCAGCAAGCTACCTAGCTG
ATAAAGTGGTTCACGGTACACAAGTTGATATCGACCGTTACCTTGATTACCTCAAGGCTGGTAATTCTGATTACCCACTT
AATGTGATTGAAAAAGCTGGAGTTGATATGACAAGTAGTGATTATCTGGATGCTGCCTTCAAGATTTTTGAAGACCGCCT
AAATGAACTAGAAGCCTTGGTTGAAAAAGGGGCACACCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72

100

0.72

Multiple sequence alignment