Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCD41_RS01460 Genome accession   NZ_CP083819
Coordinates   309366..309890 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter roggenkampii strain 13840-yvys     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 304366..314890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD41_RS01440 (LCD41_01445) aphA 304690..305403 (+) 714 WP_047745039.1 acid phosphatase AphA -
  LCD41_RS01445 (LCD41_01450) - 305517..305933 (+) 417 WP_045417704.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LCD41_RS01450 (LCD41_01455) - 305936..306289 (+) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  LCD41_RS01455 (LCD41_01460) uvrA 306293..309115 (-) 2823 WP_047745038.1 excinuclease ABC subunit UvrA -
  LCD41_RS01460 (LCD41_01465) ssb 309366..309890 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LCD41_RS01465 (LCD41_01470) - 309953..310234 (-) 282 WP_008503385.1 YjcB family protein -
  LCD41_RS01470 (LCD41_01475) - 310871..312436 (+) 1566 WP_047745037.1 EAL domain-containing protein -
  LCD41_RS01475 (LCD41_01480) soxS 312443..312769 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  LCD41_RS01480 (LCD41_01485) soxR 312868..313326 (+) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  LCD41_RS01485 (LCD41_01490) - 313701..314372 (+) 672 WP_008503389.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=608091 LCD41_RS01460 WP_008503384.1 309366..309890(+) (ssb) [Enterobacter roggenkampii strain 13840-yvys]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=608091 LCD41_RS01460 WP_008503384.1 309366..309890(+) (ssb) [Enterobacter roggenkampii strain 13840-yvys]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368